JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDFY2_chr13_51579462_51772709	0/0	t0030	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0031	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0032	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0033	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0034	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0035	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0036	8123	1	0	0	1	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0037	8116	1	0	0	0	0	1	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0038	8167	1	0	0	1	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0039	8167	1	0	0	1	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0040	8167	1	0	0	0	0	1	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0041	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0042	8167	1	0	1	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0043	8154	1	0	0	1	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0044	8154	1	0	0	1	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0045	8154	1	0	0	0	0	1	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0046	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY3_chr4_84664597_84971690	1/0	t0001	3979	105	33	18	34	5	14	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0002	3979	101	16	28	36	5	16	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0003	3979	10	10	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0004	3979	2	0	0	2	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0005	3979	2	0	0	0	0	2	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0006	3979	2	2	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0007	3979	2	2	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0008	3981	2	0	1	1	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0009	3979	2	2	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0010	3979	1	0	0	1	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0011	3979	1	0	0	0	0	1	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0012	3979	1	0	1	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0013	3981	1	0	0	1	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0014	3979	1	0	0	0	0	1	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/1	t0015	3979	1	0	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0016	3979	1	0	0	1	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0017	3979	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0018	3979	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0019	3981	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0020	3981	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0021	3981	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0022	3979	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY3_chr4_84664597_84971690	0/0	t0023	3979	1	1	0	0	0	0	copy fasta	WDFY3	chr4	84664597	84971690
WDFY4_chr10_48679873_48987956	0/1	t0001	529	105	39	28	20	4	13	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0002	529	62	22	15	17	4	4	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	1/0	t0003	528	13	9	2	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0004	528	7	6	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0005	529	5	4	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0006	529	4	1	2	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0007	529	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0008	529	1	0	0	0	0	1	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0009	529	1	0	0	1	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0010	529	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956