JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDFY4_chr10_48679873_48987956	0/0	t0011	529	1	1	0	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDFY4_chr10_48679873_48987956	0/0	t0012	529	1	0	1	0	0	0	copy fasta	WDFY4	chr10	48679873	48987956
WDHD1_chr14_54933949_55032099	0/1	t0001	2631	120	25	25	52	5	12	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0002	2627	102	22	29	35	5	11	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0003	2631	15	13	2	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0004	2631	8	3	4	0	1	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0005	2629	8	2	2	0	1	3	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0006	2629	5	5	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0007	2631	3	3	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0008	2630	3	3	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0009	2629	2	0	0	0	0	2	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0010	2629	2	1	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0011	2629	2	2	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0012	2629	2	2	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0013	2627	2	0	0	2	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0014	2631	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0015	2631	1	0	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0016	2630	1	0	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0017	2627	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0018	2642	1	0	0	1	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	1/0	t0019	2630	1	0	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0020	2631	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0021	2627	1	0	1	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0022	2630	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0023	2631	1	0	0	0	0	1	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0024	2631	1	0	0	0	0	1	copy fasta	WDHD1	chr14	54933949	55032099
WDHD1_chr14_54933949_55032099	0/0	t0025	2629	1	1	0	0	0	0	copy fasta	WDHD1	chr14	54933949	55032099
WDPCP_chr2_63114559_63593477	0/0	t0001	2652	80	23	16	27	5	9	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/1	t0002	2652	19	1	9	3	0	5	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0003	2651	17	13	2	0	1	1	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0004	2652	14	0	4	1	1	8	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	1/0	t0005	2654	13	5	0	6	1	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0006	2652	7	0	1	4	1	1	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0007	2651	7	0	3	2	1	1	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0008	2652	4	4	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0009	2652	4	2	1	0	0	1	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0010	2651	3	3	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0011	2652	3	3	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0012	2652	3	0	0	3	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0013	2652	3	0	0	3	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0014	2652	3	0	0	0	0	3	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0015	2652	2	2	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0016	2653	2	2	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0017	2652	2	0	0	0	1	1	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0018	2652	2	0	1	0	1	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0019	2652	2	2	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0020	2652	2	0	0	2	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0021	2651	2	0	0	1	1	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0022	2652	2	0	0	0	1	1	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0023	2651	2	0	2	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477