JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDPCP_chr2_63114559_63593477	0/0	t0024	2652	2	0	0	2	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0025	2652	1	0	0	1	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0026	2653	1	0	0	1	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0027	2652	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0028	2653	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0029	2653	1	0	1	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0030	2653	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0031	2652	1	0	1	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0032	2653	1	0	0	0	0	1	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0033	2652	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0034	2652	1	0	0	1	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0035	2651	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0036	2651	1	0	1	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0037	2652	1	0	1	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0038	2639	1	1	0	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0039	2652	1	0	1	0	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDPCP_chr2_63114559_63593477	0/0	t0040	2652	1	0	0	1	0	0	copy fasta	WDPCP	chr2	63114559	63593477
WDR11_chr10_120846362_120914524	1/1	t0001	871	214	41	40	98	9	24	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0002	875	88	3	21	55	2	7	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0003	875	51	21	9	11	5	5	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0004	875	10	9	1	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0005	875	7	7	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0006	875	4	4	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0007	875	2	2	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0008	871	2	1	1	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0009	875	2	2	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0010	875	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0011	871	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0012	871	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0013	891	1	1	0	0	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0014	871	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR11_chr10_120846362_120914524	0/0	t0015	875	1	0	0	1	0	0	copy fasta	WDR11	chr10	120846362	120914524
WDR12_chr2_202869261_202916673	0/0	t0001	6795	76	3	12	56	2	3	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0002	6796	74	0	14	48	2	10	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0003	6794	28	10	11	2	0	5	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/1	t0004	6795	22	4	8	2	4	3	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0005	6796	19	15	4	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0006	6797	15	9	3	2	0	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0007	6795	14	3	1	8	0	2	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0008	6795	12	0	0	11	0	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0009	6799	12	0	5	3	4	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0010	6796	7	7	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0011	6795	7	0	0	7	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0012	6795	7	0	5	0	1	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0013	6795	6	0	3	3	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0014	6796	6	0	4	1	0	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0015	6795	6	6	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0016	6797	5	0	1	2	0	2	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0017	6795	3	0	0	2	0	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0018	6798	3	0	0	3	0	0	copy fasta	WDR12	chr2	202869261	202916673