JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR12_chr2_202869261_202916673	0/0	t0019	6795	3	3	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0020	6795	3	0	0	3	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0021	6795	3	1	2	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0022	6797	3	3	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0023	6796	3	0	0	0	0	3	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0024	6796	2	0	0	2	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0025	6796	2	2	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0026	6796	2	2	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0027	6797	2	2	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0028	6797	2	2	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0029	6796	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0030	6794	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0031	6795	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0032	6795	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0033	6797	1	0	1	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0034	6796	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0035	6797	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0036	6794	1	0	1	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0037	6796	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0038	6796	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0039	6796	1	0	0	0	0	1	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0040	6797	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0041	6796	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0042	6797	1	0	0	0	1	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0043	6795	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0044	6795	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0045	6795	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0046	6797	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0047	6797	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0048	6795	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0049	6796	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0050	6775	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0051	6795	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0052	6797	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0053	6797	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0054	6797	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0055	6797	1	0	1	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	1/0	t0056	6797	1	0	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0057	6795	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0058	6797	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0059	6795	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0060	6797	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0061	6797	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0062	6797	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0063	6800	1	0	0	1	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0064	6800	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR12_chr2_202869261_202916673	0/0	t0065	6796	1	1	0	0	0	0	copy fasta	WDR12	chr2	202869261	202916673
WDR13_chrX_48592492_48613869	0/0	t0001	4001	40	6	6	19	1	8	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0002	4001	23	0	4	18	0	1	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0003	4002	22	8	3	7	1	3	copy fasta	WDR13	chrX	48592492	48613869