JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR13_chrX_48592492_48613869	0/0	t0054	4000	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0055	3997	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0056	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0057	4004	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0058	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0059	4000	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0060	4002	1	0	0	0	0	1	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0061	4000	1	0	0	0	1	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0062	3999	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0063	4000	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0064	3998	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0065	4004	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0066	3999	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	1/0	t0067	4000	1	0	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0068	4004	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0069	4002	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0070	4007	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0071	4002	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0072	4003	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0073	4001	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0074	4004	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0075	4003	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0076	4005	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0077	4002	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0078	4000	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0079	4001	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0080	4001	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0081	4002	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0082	4004	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0083	4005	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0084	4006	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0085	4007	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0086	4003	1	0	0	0	0	1	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0087	4000	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0088	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0089	4001	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0090	4005	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0091	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0092	4001	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0093	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0094	4002	1	0	0	0	1	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0095	4000	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0096	4000	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0097	4001	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0098	4002	1	1	0	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0099	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0100	3999	1	0	1	0	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0101	4006	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0102	4003	1	0	0	0	0	1	copy fasta	WDR13	chrX	48592492	48613869
WDR13_chrX_48592492_48613869	0/0	t0103	4002	1	0	0	1	0	0	copy fasta	WDR13	chrX	48592492	48613869