JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR24_chr16_679622_695398	0/0	t0005	871	1	0	0	1	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/1	t0006	871	1	0	0	0	0	0	copy fasta	WDR24	chr16	679622	695398
WDR24_chr16_679622_695398	0/0	t0007	871	1	0	0	1	0	0	copy fasta	WDR24	chr16	679622	695398
WDR25_chr14_100371485_100535303	0/0	t0001	289	216	82	27	80	10	17	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	t0002	289	4	0	0	4	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	t0003	289	2	2	0	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	t0004	289	2	1	1	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	t0005	289	2	0	0	2	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	t0006	289	1	1	0	0	0	0	copy fasta	WDR25	chr14	100371485	100535303
WDR25_chr14_100371485_100535303	0/0	t0007	289	1	0	0	0	0	1	copy fasta	WDR25	chr14	100371485	100535303
WDR26_chr1_224380146_224439797	0/0	t0001	5083	82	10	19	36	4	13	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0002	5082	24	12	5	0	4	3	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0003	5083	23	0	10	9	1	3	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/1	t0004	5083	19	7	3	1	0	7	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0005	5083	17	12	2	1	0	2	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0006	5082	13	12	1	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0007	5084	10	0	4	2	0	4	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0008	5083	10	6	4	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	1/0	t0009	5082	6	5	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0010	5081	6	6	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0011	5084	5	1	1	1	0	2	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0012	5083	4	2	0	0	0	2	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0013	5084	3	1	0	1	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0014	5083	3	3	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0015	5081	3	3	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0016	5082	3	0	2	0	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0017	5084	3	0	2	0	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0018	5083	2	0	0	2	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0019	5084	1	0	1	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0020	5082	1	1	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0021	5082	1	0	0	0	1	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0022	5083	1	0	0	0	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0023	5083	1	0	0	0	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0024	5082	1	1	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0025	5082	1	1	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0026	5082	1	1	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0027	5085	1	0	0	0	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0028	5084	1	0	0	0	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0029	5084	1	0	1	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0030	5084	1	0	0	1	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0031	5084	1	0	1	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0032	5083	1	0	0	0	0	1	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0033	5083	1	1	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR26_chr1_224380146_224439797	0/0	t0034	5082	1	1	0	0	0	0	copy fasta	WDR26	chr1	224380146	224439797
WDR27_chr6_169452212_169707029	0/0	t0001	867	69	1	15	49	0	4	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/1	t0002	867	53	17	3	23	1	8	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	1/0	t0003	867	47	12	12	11	1	10	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0004	867	26	2	4	18	0	2	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0005	867	23	7	2	13	1	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0006	867	18	9	6	1	1	1	copy fasta	WDR27	chr6	169452212	169707029