JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR27_chr6_169452212_169707029	0/0	t0007	867	16	10	2	2	1	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0008	867	12	9	0	1	1	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0009	889	9	0	6	3	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0010	867	6	4	1	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0011	867	2	0	0	2	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0012	867	2	2	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0013	867	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0014	867	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0015	867	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0016	867	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0017	867	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0018	867	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0019	867	1	0	0	0	0	1	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0020	867	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0021	867	1	1	0	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0022	879	1	0	0	1	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR27_chr6_169452212_169707029	0/0	t0023	889	1	0	1	0	0	0	copy fasta	WDR27	chr6	169452212	169707029
WDR31_chr9_113308222_113345275	1/1	t0001	3768	117	23	18	62	2	10	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0002	3765	36	0	0	36	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0003	3769	34	2	2	25	0	5	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0004	3765	34	2	4	19	0	9	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0005	3763	25	8	5	6	1	5	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0006	3764	23	0	4	10	2	7	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0007	3769	15	0	6	9	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0008	3764	14	4	7	0	3	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0009	3762	8	7	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0010	3762	8	7	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0011	3768	7	6	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0012	3767	6	0	0	6	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0013	3768	5	0	5	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0014	3763	4	3	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0015	3770	4	2	0	2	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0016	3768	4	0	0	4	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0017	3764	4	4	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0018	3762	4	4	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0019	3763	3	3	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0020	3765	3	1	0	0	2	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0021	3766	3	0	0	2	0	1	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0022	3763	2	2	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0023	3769	2	0	1	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0024	3769	2	0	0	2	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0025	3768	2	0	2	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0026	3769	2	0	0	2	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0027	3763	2	0	0	2	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0028	3763	2	0	2	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0029	3765	2	0	2	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0030	3770	2	0	0	2	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0031	3762	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0032	3763	1	0	0	0	0	1	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0033	3763	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275