JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR31_chr9_113308222_113345275	0/0	t0034	3764	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0035	3762	1	0	0	0	1	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0036	3762	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0037	3762	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0038	3762	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0039	3768	1	0	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0040	3769	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0041	3770	1	0	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0042	3764	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0043	3770	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0044	3765	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0045	3762	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0046	3763	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0047	3765	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0048	3768	1	0	0	0	0	1	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0049	3769	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0050	3768	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0051	3764	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0052	3779	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0053	3769	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0054	3765	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0055	3764	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0056	3762	1	1	0	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0057	3755	1	0	0	0	1	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0058	3768	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0059	3765	1	0	0	0	0	1	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0060	3764	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0061	3764	1	0	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0062	3763	1	0	0	0	0	1	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0063	3764	1	0	0	0	0	1	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0064	3767	1	0	1	0	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0065	3765	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0066	3765	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR31_chr9_113308222_113345275	0/0	t0067	3765	1	0	0	1	0	0	copy fasta	WDR31	chr9	113308222	113345275
WDR33_chr2_127696027_127816171	0/1	t0001	5480	134	32	28	55	4	14	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0002	5480	39	7	11	15	2	4	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0003	5480	36	13	4	9	3	7	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0004	5480	14	13	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0005	5480	14	0	4	6	0	4	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0006	5480	11	0	2	8	0	1	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0007	5480	6	0	0	6	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0008	5480	6	0	6	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0009	5480	5	5	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0010	5480	3	3	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0011	5475	3	3	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0012	5480	3	0	0	0	0	3	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0013	5498	3	0	0	2	1	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0014	5480	2	0	1	0	1	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0015	5480	2	2	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0016	5480	2	0	0	2	0	0	copy fasta	WDR33	chr2	127696027	127816171