JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR33_chr2_127696027_127816171	0/0	t0017	5480	2	2	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0018	5480	2	0	0	0	0	2	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0019	5480	2	1	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0020	5480	2	0	0	2	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0021	5480	2	2	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0022	5480	2	2	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0023	5480	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0024	5480	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0025	5480	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0026	5480	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0027	5480	1	0	0	0	0	1	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0028	5480	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0029	5480	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0030	5480	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0031	5480	1	0	0	0	0	1	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	1/0	t0032	5480	1	0	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0033	5480	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0034	5480	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0035	5468	1	0	0	0	1	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0036	5480	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0037	5480	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0038	5480	1	0	0	0	0	1	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0039	5480	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0040	5480	1	0	0	1	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0041	5480	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0042	5480	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0043	5480	1	0	1	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0044	5480	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR33_chr2_127696027_127816171	0/0	t0045	5480	1	1	0	0	0	0	copy fasta	WDR33	chr2	127696027	127816171
WDR35_chr2_19905263_19995105	1/1	t0001	3386	162	36	27	72	5	20	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0002	3386	49	9	13	14	5	8	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0003	3386	40	1	4	28	0	7	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0004	3386	27	1	9	15	0	2	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0005	3386	23	10	6	6	0	1	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0006	3386	23	0	0	21	2	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0007	3386	22	4	1	16	1	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0008	3386	9	7	2	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0009	3386	8	8	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0010	3386	7	7	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0011	3386	3	3	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0012	3386	3	0	0	3	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0013	3386	2	2	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0014	3386	2	2	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0015	3386	2	0	1	0	0	1	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0016	3386	2	2	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0017	3386	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0018	3386	1	0	1	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0019	3386	1	0	1	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0020	3386	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0021	3386	1	0	1	0	0	0	copy fasta	WDR35	chr2	19905263	19995105