JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR35_chr2_19905263_19995105	0/0	t0022	3386	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0023	3386	1	0	0	0	1	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0024	3386	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0025	3386	1	0	0	0	1	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0026	3386	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0027	3386	1	0	0	0	1	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0028	3386	1	0	0	1	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0029	3386	1	1	0	0	0	0	copy fasta	WDR35	chr2	19905263	19995105
WDR35_chr2_19905263_19995105	0/0	t0030	3386	1	0	0	0	0	1	copy fasta	WDR35	chr2	19905263	19995105
WDR36_chr5_111087348_111135502	0/1	t0001	3729	136	10	26	82	4	13	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	1/0	t0002	3729	79	3	10	59	2	4	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0003	3729	44	3	15	13	4	9	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0004	3728	31	16	2	12	0	1	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0005	3718	16	6	7	0	0	3	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0006	3720	10	2	0	4	0	4	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0007	3729	9	7	2	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0008	3729	9	9	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0009	3730	7	2	0	5	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0010	3728	6	5	1	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0011	3730	6	0	0	6	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0012	3718	6	1	2	0	1	2	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0013	3729	6	0	3	0	0	3	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0014	3729	5	2	0	0	1	2	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0015	3730	5	5	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0016	3729	4	4	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0017	3729	4	4	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0018	3731	4	3	1	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0019	3729	3	0	0	3	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0020	3729	3	0	0	3	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0021	3728	2	1	1	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0022	3730	2	2	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0023	3728	2	0	2	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0024	3729	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0025	3729	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0026	3728	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0027	3728	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0028	3728	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0029	3729	1	0	1	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0030	3729	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0031	3729	1	0	0	0	0	1	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0032	3729	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0033	3729	1	0	0	0	0	1	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0034	3729	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0035	3730	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0036	3730	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0037	3729	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0038	3719	1	0	0	0	0	1	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0039	3721	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0040	3720	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0041	3729	1	0	0	1	0	0	copy fasta	WDR36	chr5	111087348	111135502