JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR36_chr5_111087348_111135502	0/0	t0042	3729	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0043	3729	1	0	1	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR36_chr5_111087348_111135502	0/0	t0044	3729	1	1	0	0	0	0	copy fasta	WDR36	chr5	111087348	111135502
WDR37_chr10_1051385_1137372	0/0	t0001	3657	62	8	7	29	3	15	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0002	3651	38	2	7	24	1	4	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0003	3653	19	1	3	15	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0004	3657	17	0	7	10	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0005	3657	14	10	4	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0006	3657	13	0	9	0	3	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0007	3650	12	8	3	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0008	3651	12	0	0	9	2	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0009	3655	11	11	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0010	3657	10	0	2	8	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0011	3653	9	1	6	0	1	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0012	3653	8	1	3	1	1	2	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0013	3657	8	0	0	7	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0014	3657	7	0	0	3	1	3	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	1/0	t0015	3653	6	5	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0016	3653	6	1	0	5	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0017	3651	6	0	1	5	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0018	3657	6	5	1	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0019	3657	5	0	0	5	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0020	3659	5	0	0	5	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/1	t0021	3653	4	0	1	0	2	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0022	3655	4	0	2	2	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0023	3657	3	0	0	2	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0024	3650	3	1	0	1	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0025	3653	3	0	1	2	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0026	3654	3	3	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0027	3655	3	2	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0028	3655	3	1	0	1	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0029	3657	2	0	1	0	1	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0030	3657	2	0	0	2	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0031	3651	2	0	0	2	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0032	3657	2	0	0	1	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0033	3661	2	0	0	2	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0034	3652	2	1	1	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0035	3657	2	0	0	1	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0036	3659	2	2	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0037	3651	2	0	1	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0038	3653	2	2	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0039	3659	2	2	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0040	3657	2	2	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0041	3650	2	2	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0042	3655	1	0	0	0	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0043	3653	1	0	1	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0044	3657	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0045	3653	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0046	3652	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0047	3666	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372