JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR37_chr10_1051385_1137372	0/0	t0048	3653	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0049	3661	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0050	3652	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0051	3657	1	0	0	0	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0052	3651	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0053	3661	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0054	3652	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0055	3657	1	0	1	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0056	3653	1	0	1	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0057	3657	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0058	3654	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0059	3652	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0060	3656	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0061	3653	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0062	3659	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0063	3650	1	0	0	0	0	1	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0064	3650	1	0	0	0	1	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0065	3657	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0066	3656	1	0	1	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0067	3653	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0068	3651	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0069	3653	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0070	3664	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0071	3659	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0072	3655	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0073	3659	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0074	3651	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0075	3653	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0076	3650	1	1	0	0	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR37_chr10_1051385_1137372	0/0	t0077	3657	1	0	0	1	0	0	copy fasta	WDR37	chr10	1051385	1137372
WDR38_chr9_124848460_124862878	0/0	t0001	321	244	81	52	76	10	25	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/1	t0002	321	104	3	22	66	4	8	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	1/0	t0003	321	63	9	2	46	0	5	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	t0004	321	1	0	0	1	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	t0005	321	1	1	0	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	t0006	321	1	0	0	1	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	t0007	321	1	1	0	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR38_chr9_124848460_124862878	0/0	t0008	321	1	1	0	0	0	0	copy fasta	WDR38	chr9	124848460	124862878
WDR3_chr1_117924739_117971543	0/0	t0001	7175	75	21	11	34	3	6	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/1	t0002	7169	65	4	12	28	4	16	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0003	7175	39	0	1	35	0	3	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0004	7177	29	5	8	11	1	4	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	1/0	t0005	7173	12	1	5	1	0	4	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0006	7171	8	0	0	6	1	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0007	7179	8	0	2	6	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0008	7175	6	0	1	5	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0009	7175	6	5	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0010	7169	6	0	6	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0011	7164	5	5	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0012	7161	5	0	2	2	0	1	copy fasta	WDR3	chr1	117924739	117971543