JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR3_chr1_117924739_117971543	0/0	t0013	7169	5	0	2	0	1	2	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0014	7167	4	2	0	1	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0015	7171	4	4	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0016	7173	4	0	0	3	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0017	7177	4	0	0	3	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0018	7179	4	4	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0019	7166	3	0	0	3	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0020	7153	3	3	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0021	7170	3	1	1	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0022	7175	3	0	0	3	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0023	7175	3	0	0	0	1	2	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0024	7177	3	0	3	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0025	7167	2	0	1	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0026	7167	2	0	0	2	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0027	7169	2	1	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0028	7169	2	0	2	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0029	7171	2	1	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0030	7167	2	0	0	2	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0031	7175	2	2	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0032	7174	2	0	0	2	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0033	7173	2	2	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0034	7165	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0035	7161	1	0	0	0	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0036	7161	1	0	0	0	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0037	7172	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0038	7183	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0039	7185	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0040	7153	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0041	7153	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0042	7153	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0043	7155	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0044	7167	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0045	7167	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0046	7168	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0047	7169	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0048	7169	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0049	7169	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0050	7169	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0051	7164	1	0	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0052	7171	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0053	7171	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0054	7171	1	0	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0055	7173	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0056	7173	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0057	7173	1	0	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0058	7173	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0059	7175	1	0	0	0	1	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0060	7175	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0061	7175	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0062	7175	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543