JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR3_chr1_117924739_117971543	0/0	t0063	7175	1	0	0	0	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0064	7175	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0065	7175	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0066	7175	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0067	7175	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0068	7177	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0069	7177	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0070	7177	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0071	7177	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0072	7177	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0073	7180	1	0	0	0	0	1	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0074	7179	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0075	7179	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0076	7175	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0077	7175	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0078	7177	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0079	7179	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0080	7179	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0081	7177	1	0	0	1	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0082	7175	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0083	7176	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0084	7177	1	1	0	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0085	7169	1	0	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR3_chr1_117924739_117971543	0/0	t0086	7171	1	0	1	0	0	0	copy fasta	WDR3	chr1	117924739	117971543
WDR41_chr5_77425933_77497316	0/0	t0001	2298	115	18	25	55	3	14	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/1	t0002	2299	77	5	11	46	4	10	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0003	2298	49	7	6	29	2	5	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0004	2298	47	1	12	21	2	11	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0005	2299	40	13	3	15	3	6	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0006	2298	19	15	4	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0007	2299	9	8	1	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0008	2299	7	6	1	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0009	2299	7	0	0	7	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	1/0	t0010	2299	7	0	3	1	2	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0011	2298	7	1	6	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0012	2299	6	3	3	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0013	2298	3	3	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0014	2299	2	0	0	0	2	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0015	2298	2	0	1	0	0	1	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0016	2298	2	0	0	2	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0017	2299	1	0	0	0	0	1	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0018	2298	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0019	2298	1	0	1	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0020	2298	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0021	2299	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0022	2299	1	0	0	1	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0023	2299	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0024	2299	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0025	2299	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0026	2298	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316