JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR41_chr5_77425933_77497316	0/0	t0027	2298	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0028	2298	1	1	0	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR41_chr5_77425933_77497316	0/0	t0029	2298	1	0	1	0	0	0	copy fasta	WDR41	chr5	77425933	77497316
WDR43_chr2_28889667_28953219	0/0	t0001	1471	116	12	27	64	3	10	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0002	1472	73	23	14	26	3	7	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	1/1	t0003	1473	54	20	7	20	1	4	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0004	1475	18	5	2	1	2	8	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0005	1474	13	3	3	3	3	1	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0006	1476	7	5	1	0	0	1	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0007	1471	6	4	2	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0008	1473	6	6	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0009	1471	5	1	1	2	1	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0010	1475	4	1	3	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0011	1473	4	2	1	0	1	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0012	1471	4	0	0	4	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0013	1469	3	0	0	3	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0014	1471	3	0	0	3	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0015	1472	2	0	2	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0016	1472	2	0	2	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0017	1471	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0018	1471	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0019	1471	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0020	1471	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0021	1471	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0022	1471	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0023	1471	1	1	0	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0024	1462	1	0	0	0	0	1	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0025	1472	1	0	0	1	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0026	1473	1	0	1	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0027	1472	1	0	1	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR43_chr2_28889667_28953219	0/0	t0028	1475	1	0	1	0	0	0	copy fasta	WDR43	chr2	28889667	28953219
WDR44_chrX_118341106_118454961	0/0	t0001	1373	127	43	28	49	0	7	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	1/1	t0002	1373	110	14	15	55	7	17	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0003	1373	31	11	1	15	0	4	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0004	1373	10	0	0	10	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0005	1373	5	0	3	2	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0006	1373	4	4	0	0	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0007	1371	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0008	1374	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0009	1373	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0010	1373	1	0	1	0	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0011	1372	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR44_chrX_118341106_118454961	0/0	t0012	1373	1	0	0	1	0	0	copy fasta	WDR44	chrX	118341106	118454961
WDR45B_chr17_82609562_82653444	0/1	t0001	1462	159	30	37	63	6	22	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0002	1462	74	10	22	24	6	12	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0003	1462	68	21	5	33	0	9	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	1/0	t0004	1462	55	14	6	31	1	2	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0005	1462	9	8	1	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0006	1462	3	3	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0007	1462	2	2	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444