JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C17orf100_chr17_6646762_6658476	0/0	t0008	1359	5	4	1	0	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	t0009	1359	4	0	0	4	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	t0010	1364	2	2	0	0	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	t0011	1359	1	0	0	0	0	1	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	t0012	1359	1	1	0	0	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	t0013	1359	1	1	0	0	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	t0014	1364	1	0	0	0	1	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	t0015	1359	1	1	0	0	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf107_chr17_4894536_4907934	1/0	t0001	2629	264	32	41	147	7	36	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0002	2629	64	16	13	28	2	5	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/1	t0003	2631	24	4	3	15	1	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0004	2628	19	16	3	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0005	2629	10	1	9	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0006	2629	9	9	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0007	2629	7	0	5	1	1	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0008	2628	6	0	0	6	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0009	2628	5	2	0	3	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0010	2628	5	5	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0011	2629	4	0	0	4	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0012	2631	3	3	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0013	2629	2	2	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0014	2631	2	0	0	2	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0015	2631	2	0	0	0	2	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0016	2629	1	0	0	0	1	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0017	2629	1	1	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0018	2629	1	1	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0019	2629	1	0	0	1	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0020	2629	1	0	0	1	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0021	2629	1	1	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0022	2629	1	1	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0023	2629	1	0	0	0	0	1	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0024	2628	1	1	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0025	2629	1	0	0	1	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0026	2629	1	0	0	1	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0027	2631	1	1	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0028	2629	1	0	0	0	0	1	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0029	2629	1	0	1	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0030	2629	1	0	0	0	0	1	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	t0031	2631	1	0	1	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf113_chr17_42033232_42055601	0/1	t0001	1705	278	72	45	121	12	27	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	t0002	1705	9	8	1	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	t0003	1705	6	5	1	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	t0004	1705	2	2	0	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	t0005	1705	1	1	0	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	t0006	1705	1	0	1	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	t0007	1705	1	0	0	1	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	t0008	1705	1	0	0	0	0	1	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	1/0	t0009	1706	1	0	0	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf114_chr17_4796159_4807328	1/1	t0001	140	426	92	74	198	14	46	copy fasta	C17orf114	chr17	4796159	4807328
C17orf49_chr17_7009782_7022520	1/1	t0001	332	382	90	70	166	16	38	copy fasta	C17orf49	chr17	7009782	7022520