JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR45B_chr17_82609562_82653444	0/0	t0008	1462	2	0	2	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0009	1462	1	0	0	1	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0010	1462	1	1	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0011	1462	1	0	0	1	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0012	1462	1	0	0	0	0	1	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0013	1462	1	0	0	1	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0014	1462	1	1	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0015	1462	1	0	1	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0016	1462	1	0	0	0	1	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0017	1462	1	1	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45B_chr17_82609562_82653444	0/0	t0018	1462	1	1	0	0	0	0	copy fasta	WDR45B	chr17	82609562	82653444
WDR45_chrX_49069442_49084887	1/1	t0001	516	265	75	50	99	11	28	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	t0002	517	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	t0003	517	1	1	0	0	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR45_chrX_49069442_49084887	0/0	t0004	517	1	0	0	1	0	0	copy fasta	WDR45	chrX	49069442	49084887
WDR46_chr6_33274108_33294239	0/0	t0001	238	212	66	38	76	12	20	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/1	t0002	238	155	29	26	79	6	14	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	t0003	238	5	0	2	1	0	2	copy fasta	WDR46	chr6	33274108	33294239
WDR46_chr6_33274108_33294239	0/0	t0004	238	1	1	0	0	0	0	copy fasta	WDR46	chr6	33274108	33294239
WDR47_chr1_108965214_109047102	0/1	t0001	1467	214	60	34	86	10	23	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	1/0	t0002	1467	91	15	21	42	3	9	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0003	1467	27	15	5	0	5	2	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0004	1467	3	3	0	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0005	1467	3	0	0	3	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0006	1467	1	0	0	1	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0007	1467	1	1	0	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0008	1467	1	0	1	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0009	1467	1	0	1	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0010	1467	1	1	0	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR47_chr1_108965214_109047102	0/0	t0011	1467	1	1	0	0	0	0	copy fasta	WDR47	chr1	108965214	109047102
WDR48_chr3_39047016_39101664	1/1	t0001	1932	136	10	25	78	6	15	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0002	1931	91	53	18	16	2	2	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0003	1931	53	1	5	38	4	5	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0004	1932	44	14	2	27	0	1	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0005	1930	7	7	0	0	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0006	1932	5	0	0	5	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0007	1930	4	0	0	4	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0008	1931	3	2	1	0	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0009	1930	3	3	0	0	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0010	1932	2	0	0	2	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0011	1932	1	0	0	0	1	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0012	1933	1	0	0	1	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0013	1932	1	0	0	1	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0014	1932	1	1	0	0	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0015	1932	1	0	0	0	1	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0016	1931	1	0	1	0	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0017	1931	1	0	0	1	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0018	1930	1	0	0	1	0	0	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0019	1932	1	0	0	0	0	1	copy fasta	WDR48	chr3	39047016	39101664
WDR48_chr3_39047016_39101664	0/0	t0020	1931	1	1	0	0	0	0	copy fasta	WDR48	chr3	39047016	39101664