JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR49_chr3_167473684_167658942	1/1	t0001	378	189	74	37	53	6	17	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	t0002	378	10	0	0	10	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	t0003	378	5	5	0	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	t0004	373	3	1	2	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	t0005	378	1	0	0	0	0	1	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	t0006	378	1	0	0	1	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR49_chr3_167473684_167658942	0/0	t0007	378	1	0	1	0	0	0	copy fasta	WDR49	chr3	167473684	167658942
WDR4_chr21_42844226_42884539	0/0	t0001	868	155	10	34	90	2	19	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	1/0	t0002	868	84	7	7	55	2	12	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/1	t0003	868	57	43	10	0	2	1	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0004	868	23	9	7	0	4	3	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0005	868	17	0	4	9	0	4	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0006	868	15	0	3	11	1	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0007	868	10	0	4	0	3	3	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0008	868	8	8	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0009	868	6	6	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0010	868	6	0	2	0	2	2	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0011	868	6	5	1	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0012	868	5	0	0	5	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0013	868	4	0	0	0	0	4	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0014	868	1	0	1	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0015	868	1	1	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0016	868	1	1	0	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR4_chr21_42844226_42884539	0/0	t0017	868	1	0	1	0	0	0	copy fasta	WDR4	chr21	42844226	42884539
WDR53_chr3_196549177_196573554	1/1	t0001	518	349	61	71	150	16	49	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	t0002	518	15	13	2	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	t0003	518	8	8	0	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	t0004	518	7	7	0	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	t0005	518	3	2	1	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	t0006	518	2	2	0	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	t0007	518	1	0	0	0	0	1	copy fasta	WDR53	chr3	196549177	196573554
WDR53_chr3_196549177_196573554	0/0	t0008	518	1	1	0	0	0	0	copy fasta	WDR53	chr3	196549177	196573554
WDR54_chr2_74416730_74430755	1/1	t0001	142	390	98	65	179	12	34	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	t0002	142	2	2	0	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	t0003	142	1	0	0	1	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR54_chr2_74416730_74430755	0/0	t0004	142	1	0	1	0	0	0	copy fasta	WDR54	chr2	74416730	74430755
WDR55_chr5_140659904_140677345	1/0	t0001	2701	130	24	23	61	3	18	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/1	t0002	2701	114	29	19	52	6	7	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0003	2702	64	15	8	32	3	6	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0004	2702	10	1	2	6	0	1	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0005	2702	8	0	0	8	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0006	2703	7	6	1	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0007	2700	6	1	1	2	1	1	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0008	2701	4	4	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0009	2702	4	2	0	2	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0010	2702	3	3	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0011	2702	2	0	0	0	0	2	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0012	2700	2	0	1	0	1	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0013	2701	2	0	1	0	1	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0014	2698	2	2	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345