JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR55_chr5_140659904_140677345	0/0	t0015	2701	2	2	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0016	2702	2	2	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0017	2703	2	0	1	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0018	2704	2	2	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0019	2701	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0020	2703	1	0	0	0	1	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0021	2701	1	1	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0022	2701	1	0	1	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0023	2701	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0024	2701	1	0	0	0	0	1	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0025	2701	1	1	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0026	2701	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0027	2701	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0028	2701	1	0	0	0	0	1	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0029	2698	1	1	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0030	2702	1	1	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0031	2702	1	0	0	0	0	1	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0032	2701	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0033	2701	1	0	0	1	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR55_chr5_140659904_140677345	0/0	t0034	2702	1	1	0	0	0	0	copy fasta	WDR55	chr5	140659904	140677345
WDR59_chr16_74866362_74990123	0/0	t0001	2954	73	11	17	27	4	14	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/1	t0002	2954	54	1	12	27	6	7	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0003	2954	16	7	3	1	3	2	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	1/0	t0004	2954	13	5	2	0	3	2	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0005	2954	13	1	1	10	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0006	2954	8	8	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0007	2954	8	8	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0008	2954	6	6	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0009	2954	6	0	0	6	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0010	2950	6	1	1	0	2	2	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0011	2954	5	1	3	0	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0012	2954	4	4	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0013	2954	4	3	0	0	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0014	2957	3	3	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0015	2954	3	0	0	3	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0016	2954	3	3	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0017	2954	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0018	2953	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0019	2953	2	0	0	1	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0020	2955	2	0	1	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0021	2954	2	0	0	1	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0022	2954	2	0	1	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0023	2954	2	0	0	1	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0024	2953	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0025	2953	2	0	0	0	0	2	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0026	2949	2	0	0	2	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0027	2952	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0028	2951	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0029	2954	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0030	2949	2	2	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123