JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR59_chr16_74866362_74990123	0/0	t0031	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0032	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0033	2957	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0034	2957	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0035	2958	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0036	2954	1	0	0	0	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0037	2954	1	0	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0038	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0039	2954	1	0	0	0	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0040	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0041	2955	1	0	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0042	2954	1	0	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0043	2953	1	0	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0044	2955	1	0	0	0	0	1	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0045	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0046	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0047	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0048	2955	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0049	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0050	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0051	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0052	2953	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0053	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0054	2954	1	0	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0055	2955	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0056	2953	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0057	2953	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0058	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0059	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0060	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0061	2955	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0062	2955	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0063	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0064	2953	1	0	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0065	2954	1	0	1	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0066	2954	1	0	0	1	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0067	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0068	2949	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0069	2949	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0070	2949	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR59_chr16_74866362_74990123	0/0	t0071	2954	1	1	0	0	0	0	copy fasta	WDR59	chr16	74866362	74990123
WDR5B_chr3_122406846_122421062	1/0	t0001	3225	131	25	35	52	6	12	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0002	3225	109	10	19	63	4	13	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/1	t0003	3225	105	5	7	79	4	9	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0004	3225	33	6	10	10	2	5	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0005	3225	29	14	0	14	0	1	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0006	3225	13	11	2	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0007	3225	8	7	1	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0008	3225	7	7	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0009	3225	4	0	3	0	1	0	copy fasta	WDR5B	chr3	122406846	122421062