JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR5B_chr3_122406846_122421062	0/0	t0010	3280	3	0	0	0	1	2	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0011	3225	3	0	0	0	0	3	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0012	3224	3	2	1	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0013	3225	2	0	0	2	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0014	3225	2	2	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0015	3225	2	0	0	2	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0016	3225	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0017	3225	1	0	0	1	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0018	3225	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0019	3225	1	0	0	1	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0020	3225	1	0	0	1	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0021	3225	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0022	3225	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0023	3225	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0024	3225	1	0	0	0	0	1	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0025	3225	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0026	3225	1	1	0	0	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5B_chr3_122406846_122421062	0/0	t0027	3225	1	0	0	1	0	0	copy fasta	WDR5B	chr3	122406846	122421062
WDR5_chr9_134131082_134164968	1/0	t0001	2153	128	19	19	66	5	18	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/1	t0002	2153	126	13	24	69	7	12	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0003	2153	60	0	13	36	4	7	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0004	2153	17	17	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0005	2150	14	10	4	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0006	2150	7	6	1	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0007	2153	6	6	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0008	2153	4	0	2	0	0	2	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0009	2153	4	4	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0010	2153	3	3	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0011	2153	3	0	2	0	1	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0012	2154	2	0	0	1	0	1	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0013	2150	2	0	2	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0014	2153	2	0	0	2	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0015	2153	2	0	0	2	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0016	2153	2	0	1	0	1	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0017	2153	2	2	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0018	2154	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0019	2154	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0020	2154	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0021	2154	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0022	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0023	2150	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0024	2153	1	0	1	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0025	2153	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0026	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0027	2150	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0028	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0029	2153	1	0	1	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0030	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0031	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0032	2153	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968