JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR5_chr9_134131082_134164968	0/0	t0033	2153	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0034	2154	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0035	2169	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0036	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0037	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0038	2153	1	1	0	0	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR5_chr9_134131082_134164968	0/0	t0039	2153	1	0	0	1	0	0	copy fasta	WDR5	chr9	134131082	134164968
WDR62_chr19_36049897_36110108	1/1	t0001	156	411	90	68	185	18	48	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	t0002	156	5	0	4	1	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR62_chr19_36049897_36110108	0/0	t0003	142	4	4	0	0	0	0	copy fasta	WDR62	chr19	36049897	36110108
WDR64_chr1_241647281_241807777	0/1	t0001	1767	112	14	21	52	9	15	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0002	1769	82	9	19	43	4	7	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	1/0	t0003	1767	74	60	9	0	2	2	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0004	1767	43	4	4	29	2	4	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0005	1767	2	0	1	1	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0006	1769	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0007	1767	2	2	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0008	1767	2	0	0	2	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0009	1767	1	0	0	0	1	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0010	1767	1	0	0	1	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0011	1767	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0012	1767	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0013	1767	1	0	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0014	1767	1	1	0	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR64_chr1_241647281_241807777	0/0	t0015	1767	1	0	1	0	0	0	copy fasta	WDR64	chr1	241647281	241807777
WDR6_chr3_49002391_49020951	0/1	t0001	705	156	45	36	50	8	16	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	t0002	705	61	29	8	18	3	3	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	1/0	t0003	705	25	9	5	0	7	3	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	t0004	705	2	2	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	t0005	705	1	0	1	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	t0006	705	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	t0007	705	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR6_chr3_49002391_49020951	0/0	t0008	705	1	1	0	0	0	0	copy fasta	WDR6	chr3	49002391	49020951
WDR70_chr5_37374318_37758435	1/1	t0001	913	235	84	44	80	2	23	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	t0002	913	4	0	1	0	2	1	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	t0003	913	2	0	0	0	2	0	copy fasta	WDR70	chr5	37374318	37758435
WDR70_chr5_37374318_37758435	0/0	t0004	913	1	0	1	0	0	0	copy fasta	WDR70	chr5	37374318	37758435
WDR72_chr15_53508741_53764663	0/1	t0001	4008	54	1	11	32	4	5	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0002	4046	38	0	3	34	1	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0003	4092	27	1	6	13	1	6	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0004	4084	26	2	7	13	1	3	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0005	4014	22	6	9	2	4	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0006	4002	9	9	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0007	4014	7	0	0	7	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0008	4044	7	7	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0009	4006	6	0	0	5	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0010	4008	5	0	3	2	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0011	4008	5	5	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0012	4016	5	0	4	0	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0013	4092	5	0	3	0	0	2	copy fasta	WDR72	chr15	53508741	53764663