JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR72_chr15_53508741_53764663	0/0	t0014	4044	4	2	2	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0015	4050	4	4	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0016	4006	4	0	3	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0017	4046	4	4	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0018	4044	4	4	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0019	4014	3	2	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0020	4002	3	3	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0021	4092	3	0	1	0	1	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0022	4052	3	0	3	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0023	4008	2	2	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0024	4008	2	2	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0025	4008	2	0	2	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0026	4086	2	0	0	0	0	2	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0027	4132	2	0	2	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0028	4092	2	0	0	2	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0029	4008	2	0	0	2	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0030	4044	2	2	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0031	4008	2	2	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0032	4043	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0033	4010	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0034	4084	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0035	4006	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0036	4086	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0037	4090	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0038	4046	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0039	4044	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0040	4008	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0041	4084	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0042	4003	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0043	4007	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0044	4004	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0045	4004	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0046	4010	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0047	4084	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0048	4092	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0049	4008	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	1/0	t0050	4002	1	0	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0051	4014	1	0	0	0	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0052	4012	1	0	0	0	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0053	4016	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0054	4008	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0055	4084	1	0	0	0	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0056	4008	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0057	4002	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0058	4008	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0059	4006	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0060	4008	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0061	4008	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0062	4008	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0063	4126	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663