JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR72_chr15_53508741_53764663	0/0	t0064	4126	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0065	4086	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0066	4048	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0067	4130	1	0	0	0	0	1	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0068	4132	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0069	4052	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0070	4088	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0071	4094	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0072	4094	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0073	4094	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0074	4010	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0075	4002	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0076	4086	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0077	4046	1	0	0	1	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0078	4046	1	0	1	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0079	4002	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0080	4008	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR72_chr15_53508741_53764663	0/0	t0081	4090	1	1	0	0	0	0	copy fasta	WDR72	chr15	53508741	53764663
WDR73_chr15_84634285_84659283	0/0	t0001	4195	63	0	4	56	0	3	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0002	4188	39	12	12	3	4	8	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0003	4188	38	12	6	7	7	6	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0004	4188	32	1	0	25	0	6	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/1	t0005	4195	30	8	8	5	2	6	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0006	4195	24	1	9	10	0	4	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0007	4195	17	11	4	2	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0008	4195	10	1	1	8	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0009	4195	9	9	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	1/0	t0010	4195	6	0	2	0	0	3	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0011	4188	6	2	0	4	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0012	4195	5	0	0	4	0	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0013	4196	5	1	2	0	1	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0014	4195	4	0	2	1	1	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0015	4187	4	0	0	4	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0016	4195	4	3	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0017	4195	4	0	0	0	1	3	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0018	4196	3	0	1	0	1	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0019	4188	3	2	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0020	4195	3	0	3	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0021	4195	3	2	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0022	4188	3	3	0	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0023	4195	3	0	0	3	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0024	4196	3	0	0	1	1	1	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0025	4196	3	2	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0026	4195	3	2	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0027	4188	2	1	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0028	4187	2	0	0	2	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0029	4195	2	0	0	2	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0030	4196	2	0	2	0	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0031	4187	2	0	1	1	0	0	copy fasta	WDR73	chr15	84634285	84659283
WDR73_chr15_84634285_84659283	0/0	t0032	4195	2	1	1	0	0	0	copy fasta	WDR73	chr15	84634285	84659283