JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR75_chr2_189436474_189480552	1/1	t0001	155	352	76	72	152	16	34	copy fasta	WDR75	chr2	189436474	189480552
WDR75_chr2_189436474_189480552	0/0	t0002	155	12	12	0	0	0	0	copy fasta	WDR75	chr2	189436474	189480552
WDR76_chr15_43822002_43873412	0/1	t0001	2051	160	40	23	67	10	19	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0002	2052	63	22	5	34	1	1	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0003	2052	25	0	8	14	0	3	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0004	2050	12	0	1	11	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0005	2050	8	6	1	1	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	1/0	t0006	2052	8	2	1	2	0	2	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0007	2052	4	3	1	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0008	2051	4	4	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0009	2052	4	3	1	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0010	2050	2	2	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0011	2053	2	0	0	1	0	1	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0012	2051	2	2	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0013	2050	2	0	0	2	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0014	2051	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0015	2052	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0016	2049	1	0	0	1	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0017	2051	1	0	0	0	1	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0018	2051	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0019	2051	1	0	1	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0020	2053	1	1	0	0	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0021	2051	1	0	0	1	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0022	2054	1	0	0	1	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR76_chr15_43822002_43873412	0/0	t0023	2051	1	0	0	1	0	0	copy fasta	WDR76	chr15	43822002	43873412
WDR77_chr1_111434890_111454256	1/1	t0001	1428	148	44	30	52	9	11	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0002	1428	119	16	11	71	2	19	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0003	1428	66	16	3	40	0	7	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0004	1428	50	8	11	20	3	8	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0005	1428	12	0	0	12	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0006	1428	10	10	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0007	1428	9	1	0	7	0	1	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0008	1428	1	0	1	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0009	1428	1	1	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0010	1428	1	1	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0011	1428	1	0	0	1	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0012	1428	1	1	0	0	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR77_chr1_111434890_111454256	0/0	t0013	1446	1	0	0	1	0	0	copy fasta	WDR77	chr1	111434890	111454256
WDR7_chr18_56646359_57034792	0/1	t0001	2823	26	6	3	15	0	1	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0002	2827	17	2	4	6	1	4	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0003	2823	15	9	1	5	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0004	2823	9	7	1	0	1	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0005	2829	8	8	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	1/0	t0006	2823	7	1	0	0	0	5	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0007	2833	6	6	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0008	2823	5	5	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0009	2829	5	5	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0010	2828	5	5	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0011	2829	5	0	0	5	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0012	2822	4	4	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792