JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR7_chr18_56646359_57034792	0/0	t0013	2833	3	2	1	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0014	2829	3	3	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0015	2829	3	2	1	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0016	2829	3	1	1	0	0	1	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0017	2823	2	1	0	1	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0018	2823	2	0	1	0	0	1	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0019	2827	2	1	1	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0020	2829	2	1	0	0	0	1	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0021	2823	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0022	2823	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0023	2823	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0024	2823	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0025	2823	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0026	2823	1	0	0	0	0	1	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0027	2823	1	0	0	1	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0028	2827	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0029	2827	1	0	0	1	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0030	2829	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0031	2829	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR7_chr18_56646359_57034792	0/0	t0032	2829	1	1	0	0	0	0	copy fasta	WDR7	chr18	56646359	57034792
WDR81_chr17_1719704_1743585	0/0	t0001	1157	186	55	44	62	10	15	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/1	t0002	1157	113	2	11	82	2	15	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0003	1157	100	23	19	36	4	18	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0004	1156	9	8	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0005	1157	4	4	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0006	1157	4	0	2	0	2	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0007	1157	4	0	0	4	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0008	1157	4	3	1	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0009	1157	3	0	0	3	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0010	1157	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0011	1157	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0012	1157	1	1	0	0	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR81_chr17_1719704_1743585	0/0	t0013	1157	1	0	0	1	0	0	copy fasta	WDR81	chr17	1719704	1743585
WDR82_chr3_52249434_52283649	0/0	t0001	3346	99	19	22	39	3	16	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0002	3346	91	8	13	58	3	9	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/1	t0003	3346	52	3	11	22	5	10	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0004	3346	40	29	8	0	1	2	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0005	3346	15	3	11	0	1	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0006	3346	14	0	0	14	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0007	3347	8	0	1	5	0	2	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0008	3347	6	2	0	3	1	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0009	3346	4	3	1	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0010	3346	4	0	0	4	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0011	3346	3	3	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0012	3347	3	0	0	2	0	1	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0013	3346	3	2	1	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0014	3346	2	0	0	2	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0015	3346	2	2	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0016	3346	2	2	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0017	3346	2	0	2	0	0	0	copy fasta	WDR82	chr3	52249434	52283649