JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR82_chr3_52249434_52283649	0/0	t0018	3347	2	0	2	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0019	3347	2	0	0	1	0	1	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0020	3347	1	1	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0021	3346	1	1	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	1/0	t0022	3345	1	0	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0023	3346	1	1	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0024	3346	1	0	1	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0025	3346	1	1	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0026	3346	1	0	0	1	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0027	3346	1	1	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0028	3347	1	0	0	0	0	1	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0029	3346	1	0	0	1	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0030	3345	1	1	0	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR82_chr3_52249434_52283649	0/0	t0031	3346	1	0	1	0	0	0	copy fasta	WDR82	chr3	52249434	52283649
WDR83OS_chr19_12663073_12674415	1/1	t0001	299	348	44	68	168	18	48	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83OS_chr19_12663073_12674415	0/0	t0002	299	37	34	3	0	0	0	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83OS_chr19_12663073_12674415	0/0	t0003	299	17	16	1	0	0	0	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83OS_chr19_12663073_12674415	0/0	t0004	299	2	2	0	0	0	0	copy fasta	WDR83OS	chr19	12663073	12674415
WDR83_chr19_12661807_12680832	1/1	t0001	503	414	95	70	182	17	48	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	t0002	503	1	1	0	0	0	0	copy fasta	WDR83	chr19	12661807	12680832
WDR83_chr19_12661807_12680832	0/0	t0003	503	1	0	0	0	1	0	copy fasta	WDR83	chr19	12661807	12680832
WDR86_chr7_151376124_151415038	1/1	t0001	908	269	71	47	100	10	39	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0002	908	104	0	24	78	2	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0003	908	35	14	6	9	4	2	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0004	908	20	3	0	9	2	6	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0005	908	8	8	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0006	908	8	0	3	5	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0007	908	6	1	1	4	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0008	908	1	0	1	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0009	908	1	1	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0010	908	1	0	1	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0011	908	1	1	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0012	908	1	1	0	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0013	908	1	0	0	0	0	1	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0014	908	1	0	1	0	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR86_chr7_151376124_151415038	0/0	t0015	908	1	0	0	1	0	0	copy fasta	WDR86	chr7	151376124	151415038
WDR87_chr19_37879823_37911594	1/1	t0001	252	167	42	39	50	17	17	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	t0002	252	116	21	10	74	1	10	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	t0003	253	43	10	9	23	0	1	copy fasta	WDR87	chr19	37879823	37911594
WDR87_chr19_37879823_37911594	0/0	t0004	253	4	1	0	3	0	0	copy fasta	WDR87	chr19	37879823	37911594
WDR88_chr19_33127114_33180799	1/1	t0001	284	358	92	62	144	14	44	copy fasta	WDR88	chr19	33127114	33180799
WDR89_chr14_63592039_63646871	1/1	t0001	1946	213	50	45	77	9	30	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0002	1946	32	20	2	6	1	3	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0003	1946	8	6	2	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0004	1945	4	0	4	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0005	1946	4	3	1	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0006	1946	3	3	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0007	1946	3	3	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0008	1946	2	2	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0009	1946	2	0	0	2	0	0	copy fasta	WDR89	chr14	63592039	63646871