JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR89_chr14_63592039_63646871	0/0	t0010	1946	2	0	0	2	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0011	1946	1	1	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0012	1946	1	1	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0013	1946	1	1	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0014	1946	1	1	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0015	1946	1	0	1	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0016	1946	1	1	0	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0017	1946	1	0	1	0	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0018	1946	1	0	0	1	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0019	1946	1	0	0	1	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0020	1946	1	0	0	1	0	0	copy fasta	WDR89	chr14	63592039	63646871
WDR89_chr14_63592039_63646871	0/0	t0021	1946	1	0	0	0	0	1	copy fasta	WDR89	chr14	63592039	63646871
WDR90_chr16_644365_672830	0/0	t0001	294	278	62	41	143	5	27	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	1/1	t0002	294	64	7	22	8	9	16	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	t0003	294	32	27	3	1	0	1	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	t0004	294	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR90_chr16_644365_672830	0/0	t0005	294	1	1	0	0	0	0	copy fasta	WDR90	chr16	644365	672830
WDR91_chr7_135178839_135216526	0/0	t0001	2336	174	17	33	106	4	14	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0002	2337	71	4	23	17	2	25	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/1	t0003	2337	62	17	11	23	3	7	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	1/0	t0004	2337	22	17	2	0	0	2	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0005	2337	11	0	0	11	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0006	2336	9	8	1	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0007	2336	7	7	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0008	2336	5	0	0	5	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0009	2337	5	5	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0010	2336	4	4	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0011	2337	4	4	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0012	2336	3	0	0	3	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0013	2337	3	0	2	0	1	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0014	2337	3	3	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0015	2336	2	0	0	2	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0016	2337	2	2	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0017	2337	1	0	1	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0018	2337	1	0	1	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0019	2337	1	1	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0020	2337	1	1	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0021	2336	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0022	2336	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0023	2336	1	1	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0024	2337	1	1	0	0	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR91_chr7_135178839_135216526	0/0	t0025	2336	1	0	0	1	0	0	copy fasta	WDR91	chr7	135178839	135216526
WDR93_chr15_89685811_89748638	1/1	t0001	335	339	78	72	130	15	42	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	t0002	335	6	4	2	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	t0003	335	5	5	0	0	0	0	copy fasta	WDR93	chr15	89685811	89748638
WDR93_chr15_89685811_89748638	0/0	t0004	335	2	1	0	0	1	0	copy fasta	WDR93	chr15	89685811	89748638
WDR97_chr8_144102739_144123328	0/1	t0001	2048	252	32	66	102	15	36	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0002	2058	18	18	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0003	2053	14	14	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0004	2048	10	0	0	10	0	0	copy fasta	WDR97	chr8	144102739	144123328