JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDR97_chr8_144102739_144123328	0/0	t0005	2048	7	1	6	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0006	2054	7	7	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0007	2049	3	0	0	2	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0008	2059	3	3	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	1/0	t0009	2048	2	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0010	2048	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0011	2058	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0012	2064	2	0	1	0	1	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0013	2060	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0014	2054	2	2	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0015	2048	2	0	1	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0016	2054	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0017	2060	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0018	2048	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0019	2049	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0020	2060	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0021	2048	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0022	2053	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0023	2048	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0024	2049	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0025	2048	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0026	2063	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0027	2064	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0028	2058	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0029	2064	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0030	2064	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0031	2064	1	1	0	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0032	2069	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0033	2064	1	0	0	1	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0034	2049	1	0	1	0	0	0	copy fasta	WDR97	chr8	144102739	144123328
WDR97_chr8_144102739_144123328	0/0	t0035	2048	1	0	0	0	0	1	copy fasta	WDR97	chr8	144102739	144123328
WDSUB1_chr2_159230798_159291703	1/1	t0001	381	168	14	28	93	6	25	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	t0002	380	74	36	20	6	6	6	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	t0003	380	5	5	0	0	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	t0004	381	3	1	2	0	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	t0005	355	1	0	0	0	0	1	copy fasta	WDSUB1	chr2	159230798	159291703
WDSUB1_chr2_159230798_159291703	0/0	t0006	381	1	0	0	1	0	0	copy fasta	WDSUB1	chr2	159230798	159291703
WDTC1_chr1_27229632_27313636	0/1	t0001	2673	142	30	30	50	8	23	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	1/0	t0002	2673	44	38	5	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0003	2673	6	0	2	0	3	1	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0004	2675	5	0	1	4	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0005	2673	2	2	0	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0006	2674	2	2	0	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0007	2673	2	0	2	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0008	2673	1	0	0	1	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0009	2673	1	0	0	1	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0010	2673	1	1	0	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0011	2673	1	1	0	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0012	2673	1	0	0	0	1	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0013	2673	1	0	0	0	0	1	copy fasta	WDTC1	chr1	27229632	27313636