JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDTC1_chr1_27229632_27313636	0/0	t0014	2673	1	0	0	1	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0015	2673	1	1	0	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0016	2673	1	1	0	0	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0017	2673	1	0	0	0	0	1	copy fasta	WDTC1	chr1	27229632	27313636
WDTC1_chr1_27229632_27313636	0/0	t0018	2673	1	0	0	1	0	0	copy fasta	WDTC1	chr1	27229632	27313636
WEE1_chr11_9568670_9594985	1/0	t0001	1648	302	68	55	154	6	18	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0002	1644	90	11	15	51	3	10	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0003	1644	20	8	6	2	0	4	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/1	t0004	1649	20	3	3	0	5	8	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0005	1648	4	0	2	2	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0006	1648	2	0	0	0	0	2	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0007	1643	1	1	0	0	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0008	1644	1	0	1	0	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0009	1644	1	0	0	1	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE1_chr11_9568670_9594985	0/0	t0010	1648	1	1	0	0	0	0	copy fasta	WEE1	chr11	9568670	9594985
WEE2_chr7_141703353_141736271	0/1	t0001	1358	378	84	65	172	14	42	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0002	1358	6	0	0	6	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0003	1358	3	2	1	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0004	1358	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0005	1358	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0006	1358	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0007	1358	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0008	1358	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WEE2_chr7_141703353_141736271	0/0	t0009	1358	1	1	0	0	0	0	copy fasta	WEE2	chr7	141703353	141736271
WFDC10A_chr20_45624739_45636196	1/1	t0001	254	262	56	57	112	10	25	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	t0002	254	141	30	15	77	4	15	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	t0003	254	3	3	0	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	t0004	254	2	1	1	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	t0005	254	1	0	1	0	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10A_chr20_45624739_45636196	0/0	t0006	254	1	0	0	1	0	0	copy fasta	WFDC10A	chr20	45624739	45636196
WFDC10B_chr20_45679651_45710019	1/1	t0001	411	349	85	56	156	9	41	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC10B_chr20_45679651_45710019	0/0	t0002	411	91	7	16	58	5	5	copy fasta	WFDC10B	chr20	45679651	45710019
WFDC11_chr20_45643563_45675239	1/1	t0001	352	403	78	80	189	14	40	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	t0002	352	8	8	0	0	0	0	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	t0003	349	6	6	0	0	0	0	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	t0004	352	2	2	0	0	0	0	copy fasta	WFDC11	chr20	45643563	45675239
WFDC11_chr20_45643563_45675239	0/0	t0005	352	1	0	0	1	0	0	copy fasta	WFDC11	chr20	45643563	45675239
WFDC12_chr20_45118425_45129465	1/1	t0001	440	293	39	44	165	11	32	copy fasta	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	t0002	440	70	26	19	18	1	6	copy fasta	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	t0003	440	56	29	11	10	2	4	copy fasta	WFDC12	chr20	45118425	45129465
WFDC12_chr20_45118425_45129465	0/0	t0004	440	1	0	0	1	0	0	copy fasta	WFDC12	chr20	45118425	45129465
WFDC13_chr20_45697038_45713817	0/0	t0001	1069	264	38	22	172	7	25	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	1/1	t0002	1069	104	7	33	41	9	12	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0003	1069	29	16	11	2	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0004	1069	29	19	7	0	0	3	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0005	1069	7	6	1	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0006	1069	6	0	0	6	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0007	1069	4	4	0	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0008	1069	2	2	0	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0009	1069	1	0	0	1	0	0	copy fasta	WFDC13	chr20	45697038	45713817