JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WFDC13_chr20_45697038_45713817	0/0	t0010	1069	1	0	0	1	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0011	1069	1	1	0	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0012	1069	1	0	0	0	0	1	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0013	1069	1	0	0	0	0	1	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0014	1069	1	1	0	0	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC13_chr20_45697038_45713817	0/0	t0015	1069	1	0	0	1	0	0	copy fasta	WFDC13	chr20	45697038	45713817
WFDC1_chr16_84289878_84334844	0/1	t0001	633	146	19	26	72	9	19	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0002	633	124	11	22	81	1	9	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	1/0	t0003	633	51	12	12	11	4	11	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0004	633	41	7	2	28	2	2	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0005	633	32	1	7	21	1	2	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0006	633	15	1	2	9	0	3	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0007	633	11	11	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0008	633	11	8	3	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0009	633	5	0	5	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0010	633	4	4	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0011	633	4	4	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0012	633	3	3	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0013	633	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0014	633	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0015	633	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0016	633	2	2	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0017	633	2	0	0	2	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0018	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0019	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0020	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0021	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0022	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0023	633	1	0	0	0	0	1	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0024	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0025	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0026	633	1	0	0	0	0	1	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0027	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0028	633	1	0	1	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0029	601	1	0	0	0	0	1	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0030	633	1	1	0	0	0	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0031	633	1	0	0	0	1	0	copy fasta	WFDC1	chr16	84289878	84334844
WFDC1_chr16_84289878_84334844	0/0	t0032	633	1	0	0	0	0	1	copy fasta	WFDC1	chr16	84289878	84334844
WFDC2_chr20_45464753_45486532	1/1	t0001	192	411	89	70	203	10	37	copy fasta	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	t0002	192	1	0	0	1	0	0	copy fasta	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	t0003	192	1	1	0	0	0	0	copy fasta	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	t0004	192	1	0	0	0	0	1	copy fasta	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	t0005	192	1	1	0	0	0	0	copy fasta	WFDC2	chr20	45464753	45486532
WFDC2_chr20_45464753_45486532	0/0	t0006	192	1	1	0	0	0	0	copy fasta	WFDC2	chr20	45464753	45486532
WFDC3_chr20_45769213_45796883	0/1	t0001	275	272	65	52	125	11	18	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	1/0	t0002	275	123	32	16	55	4	15	copy fasta	WFDC3	chr20	45769213	45796883
WFDC3_chr20_45769213_45796883	0/0	t0003	275	15	1	4	0	3	7	copy fasta	WFDC3	chr20	45769213	45796883
WFDC5_chr20_45104463_45120174	1/1	t0001	638	329	57	53	165	12	40	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0002	638	37	2	9	19	2	5	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0003	634	29	11	10	7	0	1	copy fasta	WFDC5	chr20	45104463	45120174