JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WFDC5_chr20_45104463_45120174	0/0	t0004	634	24	23	1	0	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0005	638	2	0	0	0	0	2	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0006	634	1	1	0	0	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0007	634	1	1	0	0	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0008	638	1	0	0	1	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0009	638	1	1	0	0	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0010	638	1	0	0	1	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0011	638	1	0	0	1	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC5_chr20_45104463_45120174	0/0	t0012	638	1	0	1	0	0	0	copy fasta	WFDC5	chr20	45104463	45120174
WFDC6_chr20_45529196_45544482	1/1	t0001	347	389	91	74	173	14	35	copy fasta	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	t0002	347	45	2	3	32	0	8	copy fasta	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	t0003	347	8	1	7	0	0	0	copy fasta	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	t0004	347	1	0	0	1	0	0	copy fasta	WFDC6	chr20	45529196	45544482
WFDC6_chr20_45529196_45544482	0/0	t0005	347	1	0	0	0	0	1	copy fasta	WFDC6	chr20	45529196	45544482
WFDC8_chr20_45546762_45584284	1/1	t0001	302	376	80	69	171	14	40	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	t0002	299	19	0	0	19	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	t0003	302	8	6	2	0	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	t0004	302	4	4	0	0	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC8_chr20_45546762_45584284	0/0	t0005	302	1	0	1	0	0	0	copy fasta	WFDC8	chr20	45546762	45584284
WFDC9_chr20_45602939_45636284	1/1	t0001	406	385	81	69	181	10	42	copy fasta	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	t0002	406	7	6	1	0	0	0	copy fasta	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	t0003	406	5	3	2	0	0	0	copy fasta	WFDC9	chr20	45602939	45636284
WFDC9_chr20_45602939_45636284	0/0	t0004	406	1	0	0	1	0	0	copy fasta	WFDC9	chr20	45602939	45636284
WFIKKN1_chr16_625985_639117	1/1	t0001	330	340	71	66	140	14	47	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0002	330	25	13	11	0	0	1	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0003	330	21	0	0	20	0	1	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0004	330	8	6	2	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0005	330	2	2	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0006	330	2	2	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0007	330	1	0	0	0	0	1	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0008	330	1	0	1	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0009	330	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0010	330	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0011	330	1	0	0	1	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN1_chr16_625985_639117	0/0	t0012	330	1	1	0	0	0	0	copy fasta	WFIKKN1	chr16	625985	639117
WFIKKN2_chr17_50830586_50847353	1/0	t0001	1687	203	41	37	101	10	13	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/1	t0002	1687	152	24	35	70	8	14	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0003	1687	23	11	2	3	0	7	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0004	1687	9	6	1	2	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0005	1687	5	5	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0006	1687	4	0	0	4	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0007	1687	4	4	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0008	1687	4	0	0	0	0	4	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0009	1687	3	0	0	3	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0010	1687	2	1	0	0	0	1	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0011	1687	1	0	1	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0012	1687	1	0	0	0	0	1	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0013	1687	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0014	1687	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0015	1687	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353