JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WFIKKN2_chr17_50830586_50847353	0/0	t0016	1687	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0017	1687	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0018	1687	1	1	0	0	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFIKKN2_chr17_50830586_50847353	0/0	t0019	1687	1	0	0	1	0	0	copy fasta	WFIKKN2	chr17	50830586	50847353
WFS1_chr4_6264850_6308265	0/1	t0001	968	206	25	32	115	10	23	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	1/0	t0002	968	31	3	14	1	4	8	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0003	968	23	18	1	4	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0004	968	17	1	3	9	1	3	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0005	968	17	6	1	9	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0006	968	9	5	1	1	0	2	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0007	968	9	2	3	3	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0008	968	8	0	5	3	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0009	968	8	3	0	0	0	5	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0010	968	6	6	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0011	980	5	5	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0012	968	4	0	3	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0013	968	4	0	3	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0014	968	4	3	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0015	968	4	0	4	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0016	968	4	0	0	4	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0017	968	3	3	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0018	968	2	0	0	2	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0019	968	2	2	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0020	968	2	2	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0021	968	2	2	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0022	968	2	2	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0023	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0024	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0025	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0026	968	1	0	0	0	0	1	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0027	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0028	968	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0029	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0030	968	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0031	968	1	0	0	1	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0032	968	1	0	0	0	1	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0033	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0034	968	1	0	1	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0035	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0036	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0037	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0038	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0039	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WFS1_chr4_6264850_6308265	0/0	t0040	968	1	1	0	0	0	0	copy fasta	WFS1	chr4	6264850	6308265
WHAMM_chr15_82804628_82841108	0/0	t0001	2677	92	16	13	62	1	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0002	2673	59	11	10	31	2	5	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0003	2672	45	0	6	31	1	7	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/1	t0004	2674	31	8	14	0	3	5	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	1/0	t0005	2672	27	2	6	7	3	8	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0006	2672	18	0	1	17	0	0	copy fasta	WHAMM	chr15	82804628	82841108