JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WHAMM_chr15_82804628_82841108	0/0	t0007	2673	17	1	0	16	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0008	2674	16	4	9	0	2	1	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0009	2672	14	13	1	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0010	2673	10	0	4	2	2	2	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0011	2672	8	7	1	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0012	2675	8	7	1	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0013	2673	6	2	3	0	0	1	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0014	2675	6	0	0	6	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0015	2677	6	0	0	6	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0016	2672	5	5	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0017	2672	5	0	3	0	0	2	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0018	2672	4	4	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0019	2672	3	3	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0020	2672	3	3	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0021	2667	3	0	0	0	0	3	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0022	2673	3	3	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0023	2677	3	1	0	2	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0024	2674	3	1	1	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0025	2673	3	0	3	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0026	2674	3	0	2	0	1	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0027	2674	3	0	1	0	1	1	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0028	2677	3	0	0	3	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0029	2672	3	0	0	3	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0030	2677	2	0	0	2	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0031	2673	2	0	2	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0032	2677	1	1	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0033	2676	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0034	2673	1	1	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0035	2672	1	1	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0036	2673	1	1	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0037	2671	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0038	2672	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0039	2673	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0040	2672	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0041	2677	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0042	2677	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0043	2673	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0044	2655	1	0	1	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0045	2674	1	0	0	0	1	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0046	2677	1	0	0	1	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0047	2673	1	0	0	0	0	1	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0048	2674	1	0	0	0	1	0	copy fasta	WHAMM	chr15	82804628	82841108
WHAMM_chr15_82804628_82841108	0/0	t0049	2672	1	1	0	0	0	0	copy fasta	WHAMM	chr15	82804628	82841108
WHRN_chr9_114397080_114510473	1/1	t0001	1347	221	41	40	102	11	25	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0002	1339	69	15	23	24	3	4	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0003	1347	9	8	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0004	1347	9	7	2	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0005	1339	7	1	5	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0006	1347	3	3	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0007	1339	3	3	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473