JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WHRN_chr9_114397080_114510473	0/0	t0008	1347	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0009	1347	2	0	0	2	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0010	1339	2	2	0	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0011	1339	1	0	1	0	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0012	1347	1	0	0	1	0	0	copy fasta	WHRN	chr9	114397080	114510473
WHRN_chr9_114397080_114510473	0/0	t0013	1339	1	0	0	0	0	1	copy fasta	WHRN	chr9	114397080	114510473
WIF1_chr12_65045626_65126305	1/1	t0001	838	349	68	68	159	14	38	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	t0002	837	18	13	0	2	0	3	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	t0003	837	7	4	0	0	0	3	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	t0004	838	1	1	0	0	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	t0005	838	1	0	1	0	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	t0006	838	1	0	0	1	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIF1_chr12_65045626_65126305	0/0	t0007	838	1	0	1	0	0	0	copy fasta	WIF1	chr12	65045626	65126305
WIPF1_chr2_174554574_174602804	0/1	t0001	3216	113	16	11	64	6	15	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0002	3216	60	12	27	8	2	11	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0003	3216	53	29	10	10	2	2	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0004	3216	22	5	4	6	1	6	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	1/0	t0005	3216	17	13	1	0	0	2	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0006	3216	5	5	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0007	3216	3	0	0	3	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0008	3216	3	0	2	0	0	1	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0009	3216	2	2	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0010	3216	2	2	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0011	3216	2	2	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0012	3216	2	2	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0013	3216	1	0	0	0	1	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0014	3216	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0015	3216	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0016	3216	1	0	0	1	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0017	3216	1	0	1	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0018	3216	1	0	0	1	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0019	3216	1	0	0	0	0	1	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0020	3216	1	0	0	1	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0021	3216	1	0	1	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0022	3216	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0023	3216	1	0	0	0	0	1	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0024	3216	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0025	3216	1	0	0	0	0	1	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0026	3216	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0027	3216	1	0	1	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF1_chr2_174554574_174602804	0/0	t0028	3216	1	1	0	0	0	0	copy fasta	WIPF1	chr2	174554574	174602804
WIPF2_chr17_40214304_40289136	1/0	t0001	6170	26	5	3	7	3	7	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0002	6171	22	1	10	7	1	3	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0003	6169	15	2	5	6	1	1	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0004	6176	15	0	0	13	0	2	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0005	6172	13	0	4	4	2	3	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0006	6177	12	0	0	12	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0007	6175	12	0	0	10	0	2	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0008	6175	11	1	2	8	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0009	6174	9	1	2	5	1	0	copy fasta	WIPF2	chr17	40214304	40289136