JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C17orf75_chr17_32323441_32347173	0/0	t0024	3357	1	0	0	1	0	0	copy fasta	C17orf75	chr17	32323441	32347173
C17orf78_chr17_37370985_37397708	0/1	t0001	1093	418	76	80	199	16	46	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0002	1094	9	9	0	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0003	1093	5	5	0	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0004	1093	4	3	1	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0005	1093	1	0	0	1	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0006	1093	1	0	1	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0007	1094	1	1	0	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0008	1093	1	0	0	0	0	1	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	t0009	1093	1	0	0	0	0	1	copy fasta	C17orf78	chr17	37370985	37397708
C17orf80_chr17_73227433_73253959	0/0	t0001	1789	175	25	32	89	7	22	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	1/1	t0002	1789	116	38	15	43	1	17	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0003	1789	22	1	17	0	0	4	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0004	1789	20	0	1	19	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0005	1789	13	11	2	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0006	1788	9	9	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0007	1789	9	0	0	9	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0008	1789	6	0	3	0	2	1	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0009	1789	2	2	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0010	1789	2	2	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0011	1789	2	2	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0012	1789	2	0	0	2	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0013	1789	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0014	1789	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0015	1789	1	1	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0016	1789	1	1	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0017	1789	1	1	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	t0018	1788	1	1	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf98_chr17_38830086_38846438	0/1	t0001	153	343	71	62	159	14	36	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	t0002	153	88	23	18	39	2	6	copy fasta	C17orf98	chr17	38830086	38846438
C17orf99_chr17_78141385_78171297	1/0	t0001	275	201	45	19	114	6	16	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0002	276	83	20	14	40	1	8	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0003	273	48	2	21	8	5	12	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0004	275	47	14	13	17	1	2	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/1	t0005	276	25	2	14	1	0	7	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0006	274	13	3	2	7	1	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0007	276	12	9	1	1	0	1	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0008	277	10	2	1	6	0	1	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0009	276	3	3	0	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0010	275	1	0	1	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0011	274	1	0	0	1	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0012	274	1	0	0	1	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	t0013	277	1	0	0	0	0	1	copy fasta	C17orf99	chr17	78141385	78171297
C18orf21_chr18_35967679_35984278	1/1	t0001	323	399	98	74	180	10	35	copy fasta	C18orf21	chr18	35967679	35984278
C18orf21_chr18_35967679_35984278	0/0	t0002	323	1	0	0	0	0	1	copy fasta	C18orf21	chr18	35967679	35984278
C18orf32_chr18_49472243_49492234	0/1	t0001	5321	90	15	14	49	6	5	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0002	5322	82	2	9	63	2	6	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0003	5318	80	2	22	46	5	5	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0004	5318	21	10	6	0	1	4	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0005	5328	21	1	2	13	0	5	copy fasta	C18orf32	chr18	49472243	49492234