JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WIPF2_chr17_40214304_40289136	0/0	t0110	6172	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0111	6171	1	0	1	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0112	6178	1	0	1	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0113	6180	1	0	0	0	1	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0114	6176	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0115	6175	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0116	6178	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0117	6177	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0118	6177	1	0	1	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0119	6174	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0120	6182	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0121	6183	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0122	6179	1	0	1	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0123	6184	1	0	1	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/1	t0124	6184	1	0	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0125	6182	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0126	6185	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0127	6180	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0128	6181	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0129	6189	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0130	6187	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0131	6202	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0132	6198	1	1	0	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0133	6207	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0134	6217	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0135	6221	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0136	6170	1	0	1	0	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF2_chr17_40214304_40289136	0/0	t0137	6172	1	0	0	1	0	0	copy fasta	WIPF2	chr17	40214304	40289136
WIPF3_chr7_29801508_29922061	0/0	t0001	2772	56	12	9	29	1	5	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0002	2773	27	15	2	9	0	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0003	2769	21	7	5	5	1	3	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0004	2773	17	2	1	13	0	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/1	t0005	2773	16	2	1	12	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0006	2772	12	5	1	2	1	3	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0007	2774	8	0	0	7	0	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	1/0	t0008	2774	8	2	2	1	0	2	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0009	2773	7	1	2	0	3	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0010	2774	6	3	0	3	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0011	2771	5	2	2	0	0	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0012	2769	5	3	2	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0013	2769	4	0	2	2	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0014	2769	4	4	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0015	2772	3	0	0	1	0	2	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0016	2773	3	3	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0017	2787	3	0	2	0	0	1	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0018	2772	3	3	0	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0019	2772	3	0	0	3	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0020	2772	3	0	2	0	1	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0021	2772	3	0	3	0	0	0	copy fasta	WIPF3	chr7	29801508	29922061
WIPF3_chr7_29801508_29922061	0/0	t0022	2773	2	0	0	2	0	0	copy fasta	WIPF3	chr7	29801508	29922061