JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WIPI1_chr17_68416281_68462496	1/0	t0001	568	241	37	40	128	12	23	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/1	t0002	559	147	35	27	59	5	20	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0003	568	9	6	3	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0004	568	5	3	1	1	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0005	559	4	4	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0006	559	3	0	1	0	1	1	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0007	568	3	3	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0008	559	2	2	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0009	559	2	2	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0010	559	2	0	2	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI1_chr17_68416281_68462496	0/0	t0011	568	2	2	0	0	0	0	copy fasta	WIPI1	chr17	68416281	68462496
WIPI2_chr7_5185233_5238840	0/0	t0001	3075	107	23	12	57	2	13	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0002	3076	63	6	14	33	3	7	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0003	3081	60	8	6	40	1	5	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	1/1	t0004	3081	34	1	14	9	1	7	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0005	3076	11	10	1	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0006	3074	10	5	4	0	0	1	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0007	3077	10	8	2	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0008	3074	7	7	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0009	3076	7	0	6	0	0	1	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0010	3075	6	0	5	0	0	1	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0011	3080	6	1	1	0	1	3	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0012	3076	6	2	0	4	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0013	3077	5	3	1	0	1	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0014	3075	4	0	0	2	0	2	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0015	3081	3	0	3	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0016	3080	3	0	0	3	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0017	3077	2	2	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0018	3075	2	0	0	2	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0019	3081	2	0	0	0	0	2	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0020	3080	2	1	1	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0021	3081	2	2	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0022	3076	2	2	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0023	3076	2	0	2	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0024	3076	2	0	0	2	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0025	3081	2	0	0	2	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0026	3074	2	0	1	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0027	3075	2	0	0	1	1	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0028	3081	2	1	0	0	1	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0029	3081	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0030	3078	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0031	3081	1	0	1	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0032	3075	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0033	3081	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0034	3075	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0035	3054	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0036	3075	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0037	3074	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0038	3081	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0039	3081	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840