JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WIPI2_chr7_5185233_5238840	0/0	t0040	3081	1	0	1	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0041	3076	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0042	3076	1	0	1	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0043	3062	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0044	3076	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0045	3082	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0046	3077	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0047	3075	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0048	3080	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0049	3075	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0050	3077	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0051	3074	1	0	0	0	1	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0052	3073	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0053	3075	1	1	0	0	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIPI2_chr7_5185233_5238840	0/0	t0054	3075	1	0	0	1	0	0	copy fasta	WIPI2	chr7	5185233	5238840
WIZ_chr19_15414978_15454956	0/1	t0001	3314	138	43	39	36	3	16	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	1/0	t0002	3318	27	7	7	0	3	9	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0003	3318	12	11	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0004	3318	11	10	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0005	3314	3	0	0	3	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0006	3318	2	2	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0007	3314	2	2	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0008	3318	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0009	3314	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0010	3318	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0011	3318	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0012	3318	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0013	3314	1	0	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0014	3314	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0015	3314	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0016	3314	1	0	1	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0017	3318	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0018	3318	1	0	0	1	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0019	3318	1	1	0	0	0	0	copy fasta	WIZ	chr19	15414978	15454956
WIZ_chr19_15414978_15454956	0/0	t0020	3305	1	0	0	0	0	1	copy fasta	WIZ	chr19	15414978	15454956
WLS_chr1_68120360_68237523	1/0	t0001	1091	117	35	15	54	2	10	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0002	1091	87	13	23	42	3	6	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/1	t0003	1091	55	5	15	21	2	11	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0004	1091	15	1	1	10	0	3	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0005	1091	12	4	1	5	1	1	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0006	1091	11	4	1	3	0	3	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0007	1091	9	2	3	4	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0008	1091	8	8	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0009	1091	6	2	4	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0010	1091	3	0	0	3	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0011	1091	3	3	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0012	1091	2	0	2	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0013	1091	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0014	1091	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0015	1091	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523