JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WLS_chr1_68120360_68237523	0/0	t0016	1091	1	0	1	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0017	1091	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WLS_chr1_68120360_68237523	0/0	t0018	1091	1	1	0	0	0	0	copy fasta	WLS	chr1	68120360	68237523
WNK1_chr12_747579_916452	0/0	t0001	3648	90	40	16	16	6	12	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0002	3651	37	12	12	10	2	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0003	3648	32	0	8	16	2	6	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/1	t0004	3651	21	3	9	5	1	2	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0005	3648	17	0	3	12	1	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0006	3648	17	10	2	5	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0007	3655	14	0	0	14	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0008	3651	7	5	2	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0009	3648	6	1	1	4	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	1/0	t0010	3648	5	4	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0011	3651	5	0	5	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0012	3655	3	0	0	3	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0013	3651	3	0	1	1	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0014	3648	3	2	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0015	3652	2	0	2	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0016	3651	2	0	0	0	0	2	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0017	3652	2	0	0	0	0	2	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0018	3651	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0019	3648	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0020	3651	1	0	1	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0021	3651	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0022	3648	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0023	3651	1	0	1	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0024	3651	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0025	3651	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0026	3651	1	0	1	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0027	3651	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0028	3651	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0029	3648	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0030	3663	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0031	3651	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0032	3648	1	0	0	1	0	0	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0033	3648	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0034	3648	1	0	0	0	0	1	copy fasta	WNK1	chr12	747579	916452
WNK1_chr12_747579_916452	0/0	t0035	3648	1	1	0	0	0	0	copy fasta	WNK1	chr12	747579	916452
WNK2_chr9_93179139_93325569	1/0	t0001	427	287	64	59	114	13	36	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/1	t0002	427	28	16	7	0	3	1	copy fasta	WNK2	chr9	93179139	93325569
WNK2_chr9_93179139_93325569	0/0	t0003	427	1	0	0	0	0	1	copy fasta	WNK2	chr9	93179139	93325569
WNK3_chrX_54187823_54363046	1/0	t0001	5982	90	8	13	48	5	15	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/1	t0002	5981	27	16	5	4	0	1	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0003	5982	5	5	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0004	5981	4	4	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0005	5981	4	0	0	4	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0006	5982	4	0	4	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0007	5981	4	0	0	4	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0008	5984	2	2	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0009	5980	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046