JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNK3_chrX_54187823_54363046	0/0	t0010	5981	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0011	5980	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0012	5981	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0013	5982	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0014	5981	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0015	5983	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0016	5983	1	0	0	0	0	1	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0017	5981	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0018	5985	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0019	5983	1	1	0	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0020	5982	1	0	0	0	0	1	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0021	5982	1	0	1	0	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0022	5983	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0023	5983	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK3_chrX_54187823_54363046	0/0	t0024	5981	1	0	0	1	0	0	copy fasta	WNK3	chrX	54187823	54363046
WNK4_chr17_42775610_42802066	1/1	t0001	468	267	80	52	93	8	32	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	t0002	468	4	4	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	t0003	468	2	2	0	0	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNK4_chr17_42775610_42802066	0/0	t0004	468	1	0	0	1	0	0	copy fasta	WNK4	chr17	42775610	42802066
WNT10A_chr2_218875852_218898928	1/1	t0001	802	332	87	54	146	5	38	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	t0002	802	3	0	0	3	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	t0003	802	2	0	0	2	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	t0004	802	1	0	0	1	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	t0005	802	1	1	0	0	0	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10A_chr2_218875852_218898928	0/0	t0006	802	1	0	0	0	1	0	copy fasta	WNT10A	chr2	218875852	218898928
WNT10B_chr12_48960340_48976735	0/1	t0001	1077	165	32	29	78	10	15	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	t0002	1077	127	8	34	71	3	11	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	1/0	t0003	1077	70	42	10	2	3	12	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	t0004	1077	10	9	1	0	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	t0005	1077	6	0	0	6	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	t0006	1077	1	1	0	0	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	t0007	1077	1	0	0	1	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	t0008	1077	1	0	0	1	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT10B_chr12_48960340_48976735	0/0	t0009	1077	1	0	0	1	0	0	copy fasta	WNT10B	chr12	48960340	48976735
WNT11_chr11_76181325_76211502	1/0	t0001	836	359	64	64	177	14	39	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/1	t0002	836	57	25	16	4	4	7	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0003	836	3	0	0	3	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0004	836	2	2	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0005	836	2	0	0	2	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0006	836	1	0	0	1	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0007	836	1	0	0	1	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0008	836	1	1	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0009	836	1	0	0	1	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0010	836	1	0	0	1	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0011	836	1	0	1	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0012	836	1	0	1	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0013	836	1	1	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT11_chr11_76181325_76211502	0/0	t0014	836	1	1	0	0	0	0	copy fasta	WNT11	chr11	76181325	76211502
WNT16_chr7_121324000_121346104	1/1	t0001	2053	318	44	57	174	11	30	copy fasta	WNT16	chr7	121324000	121346104
WNT16_chr7_121324000_121346104	0/0	t0002	2057	53	37	4	7	0	5	copy fasta	WNT16	chr7	121324000	121346104