Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTN2_chr1_236681499_236769631	0/0	t0009	2188	5	4	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0010	2188	4	0	1	0	1	2	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0011	2188	3	3	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0012	2188	3	0	2	0	1	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0013	2188	3	0	0	3	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0014	2188	3	2	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0015	2195	2	2	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0016	2195	2	0	2	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0017	2195	2	1	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0018	2188	2	2	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0019	2188	2	0	0	0	0	2	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0020	2195	1	0	0	0	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0021	2195	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0022	2195	1	0	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0023	2188	1	0	1	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0024	2188	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0025	2188	1	0	0	1	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0026	2188	1	1	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN3_chr11_66541903_66568334	1/1	t0001	177	350	84	57	157	12	38	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	t0002	177	47	8	2	37	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	t0003	177	2	0	2	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	t0004	177	1	0	1	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN4_chr19_38642649_38736589	0/1	t0001	2255	85	18	13	38	5	10	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	1/0	t0002	2255	81	19	14	39	4	4	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0003	2245	19	6	8	0	2	3	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0004	2255	18	0	0	15	0	3	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0005	2255	18	3	6	4	2	3	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0006	2256	7	0	0	1	0	6	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0007	2256	7	0	1	6	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0008	2254	5	0	4	0	1	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0009	2246	5	1	2	0	0	2	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0010	2254	5	0	4	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0011	2255	4	4	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0012	2255	4	4	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0013	2254	4	0	1	0	1	2	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0014	2256	3	2	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0015	2256	3	0	1	2	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0016	2255	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0017	2256	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0018	2254	2	0	1	0	1	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0019	2256	2	1	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0020	2255	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0021	2255	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0022	2255	2	0	0	0	0	2	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0023	2251	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0024	2254	2	0	1	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0025	2257	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0026	2224	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0027	2254	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0028	2253	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589