JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C18orf32_chr18_49472243_49492234	0/0	t0006	5313	14	13	1	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0007	5326	9	0	2	5	0	2	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0008	5318	8	1	0	7	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0009	5321	7	7	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0010	5322	7	0	4	0	2	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0011	5318	5	5	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0012	5320	5	5	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0013	5316	5	0	0	5	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0014	5321	5	0	0	5	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0015	5328	5	5	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0016	5322	4	0	0	0	0	4	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0017	5322	4	4	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0018	5322	4	4	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0019	5321	3	0	1	0	0	2	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0020	5318	2	0	0	0	1	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0021	5314	2	0	0	2	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0022	5314	2	2	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0023	5318	2	2	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0024	5331	2	0	0	2	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0025	5314	2	0	0	2	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0026	5318	2	0	0	0	0	2	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0027	5326	2	0	1	0	0	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0028	5321	2	0	2	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0029	5324	2	2	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0030	5328	2	1	1	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0031	5323	2	0	2	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0032	5322	2	0	0	2	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0033	5313	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0034	5322	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0035	5320	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0036	5318	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0037	5317	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0038	5314	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0039	5314	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0040	5313	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0041	5311	1	0	1	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0042	5318	1	0	0	0	0	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0043	5318	1	0	0	0	0	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0044	5318	1	0	1	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0045	5328	1	0	0	0	1	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0046	5323	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	1/0	t0047	5318	1	0	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0048	5321	1	0	0	1	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0049	5328	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0050	5322	1	0	0	1	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0051	5317	1	0	0	1	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0052	5322	1	0	0	1	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0053	5321	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0054	5326	1	0	1	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0055	5326	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234