JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT2_chr7_117270451_117328058	0/0	t0024	2774	1	0	1	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0025	2774	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0026	2774	1	0	0	1	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0027	2775	1	0	0	1	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0028	2775	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0029	2774	1	0	0	0	0	1	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0030	2775	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0031	2775	1	0	1	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0032	2775	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0033	2775	1	0	0	1	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0034	2775	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0035	2775	1	0	1	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0036	2775	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0037	2774	1	0	0	0	0	1	copy fasta	WNT2	chr7	117270451	117328058
WNT2_chr7_117270451_117328058	0/0	t0038	2775	1	1	0	0	0	0	copy fasta	WNT2	chr7	117270451	117328058
WNT3A_chr1_228001998_228066271	0/1	t0001	1938	196	50	35	75	6	29	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	1/0	t0002	1938	86	15	12	43	5	10	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0003	1938	43	5	7	25	1	5	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0004	1938	16	4	0	12	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0005	1938	8	0	3	5	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0006	1938	7	0	7	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0007	1938	5	5	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0008	1938	4	1	0	3	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0009	1939	3	3	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0010	1938	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0011	1938	1	0	0	0	1	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0012	1938	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0013	1938	1	1	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0014	1938	1	1	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0015	1938	1	0	0	0	1	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0016	1938	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0017	1974	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0018	1938	1	1	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0019	1938	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0020	1938	1	1	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0021	1919	1	1	0	0	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0022	1938	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3A_chr1_228001998_228066271	0/0	t0023	1938	1	0	0	1	0	0	copy fasta	WNT3A	chr1	228001998	228066271
WNT3_chr17_46757506_46823692	0/1	t0001	2221	141	26	43	42	13	16	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0002	2221	55	1	12	36	0	6	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0003	2222	28	17	5	2	0	4	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0004	2221	26	20	2	0	3	1	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0005	2220	10	8	0	2	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0006	2220	3	3	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0007	2220	2	1	0	1	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0008	2221	2	0	2	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0009	2221	2	0	0	2	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0010	2221	2	2	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0011	2221	1	0	0	0	0	1	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0012	2221	1	1	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692