JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT3_chr17_46757506_46823692	0/0	t0013	2221	1	0	1	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0014	2221	1	0	0	1	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0015	2221	1	1	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0016	2220	1	0	1	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0017	2221	1	1	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0018	2221	1	0	1	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0019	2221	1	1	0	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT3_chr17_46757506_46823692	0/0	t0020	2221	1	0	1	0	0	0	copy fasta	WNT3	chr17	46757506	46823692
WNT4_chr1_22112313_22148097	0/0	t0001	2917	52	0	15	28	1	8	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0002	2914	27	9	6	8	1	3	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0003	2913	26	2	4	19	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0004	2917	25	0	0	24	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0005	2910	25	1	8	13	1	2	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0006	2919	21	0	2	17	1	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0007	2915	17	0	3	12	0	2	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0008	2911	10	0	3	0	1	6	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0009	2921	9	0	0	6	0	3	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0010	2920	8	3	1	2	0	2	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/1	t0011	2916	8	4	0	0	0	3	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0012	2911	8	1	0	7	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0013	2915	7	5	2	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0014	2913	6	0	6	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0015	2918	6	0	0	4	0	2	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0016	2912	6	2	1	2	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0017	2922	4	3	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0018	2918	4	1	1	1	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0019	2914	4	2	2	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0020	2910	4	4	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0021	2909	4	1	2	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0022	2907	4	2	2	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0023	2921	3	0	0	3	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0024	2916	3	1	1	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0025	2920	3	3	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0026	2918	3	2	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0027	2915	3	3	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0028	2913	3	1	2	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0029	2917	3	0	2	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0030	2913	3	1	1	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0031	2903	3	3	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0032	2895	3	3	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0033	2923	2	0	0	2	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0034	2919	2	0	0	0	0	2	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0035	2914	2	0	1	0	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0036	2922	2	2	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0037	2922	2	0	1	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0038	2925	2	0	0	1	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0039	2923	2	0	0	2	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0040	2909	2	1	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0041	2897	2	1	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0042	2918	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097