JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT4_chr1_22112313_22148097	0/0	t0043	2934	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0044	2919	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0045	2915	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0046	2913	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0047	2924	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0048	2917	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0049	2919	1	0	0	0	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0050	2924	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0051	2920	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0052	2918	1	0	0	0	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0053	2914	1	0	0	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0054	2914	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0055	2914	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0056	2912	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0057	2908	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0058	2908	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0059	2906	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0060	2912	1	0	0	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0061	2888	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0062	2924	1	0	0	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0063	2918	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0064	2916	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0065	2924	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0066	2912	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0067	2913	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0068	2909	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0069	2929	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0070	2925	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0071	2923	1	0	0	0	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0072	2923	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0073	2921	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0074	2921	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0075	2921	1	0	0	0	1	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0076	2919	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0077	2917	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0078	2917	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0079	2917	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0080	2917	1	0	1	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0081	2913	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0082	2913	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0083	2897	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0084	2913	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0085	2911	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0086	2909	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0087	2907	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0088	2905	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0089	2922	1	0	0	0	0	1	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0090	2916	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	1/0	t0091	2913	1	0	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0092	2911	1	0	0	0	0	1	copy fasta	WNT4	chr1	22112313	22148097