JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT4_chr1_22112313_22148097	0/0	t0093	2915	1	1	0	0	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT4_chr1_22112313_22148097	0/0	t0094	2917	1	0	0	1	0	0	copy fasta	WNT4	chr1	22112313	22148097
WNT5A_chr3_55460715_55492306	0/0	t0001	4699	93	17	15	51	2	8	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0002	4697	50	15	7	19	1	8	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	1/1	t0003	4699	45	3	12	20	2	6	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0004	4699	42	14	3	15	0	10	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0005	4699	23	2	12	1	5	3	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0006	4700	11	0	8	3	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0007	4699	10	0	1	0	2	7	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0008	4698	7	3	0	3	0	1	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0009	4699	6	6	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0010	4695	5	1	3	0	0	1	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0011	4699	4	4	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0012	4698	4	2	0	2	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0013	4697	3	3	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0014	4700	3	2	0	0	1	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0015	4701	3	0	0	3	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0016	4699	3	0	0	3	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0017	4700	3	3	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0018	4699	2	2	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0019	4699	2	0	0	2	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0020	4699	2	2	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0021	4698	2	0	1	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0022	4698	2	0	1	0	1	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0023	4702	2	2	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0024	4703	2	0	2	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0025	4700	2	2	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0026	4699	2	0	2	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0027	4699	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0028	4700	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0029	4699	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0030	4698	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0031	4699	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0032	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0033	4698	1	0	0	0	1	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0034	4698	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0035	4700	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0036	4698	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0037	4699	1	0	0	0	1	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0038	4699	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0039	4700	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0040	4700	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0041	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0042	4699	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0043	4699	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0044	4700	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0045	4700	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0046	4701	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0047	4698	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0048	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306