JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT5A_chr3_55460715_55492306	0/0	t0049	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0050	4698	1	0	0	1	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0051	4700	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0052	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0053	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0054	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0055	4699	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0056	4699	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0057	4700	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0058	4700	1	1	0	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5A_chr3_55460715_55492306	0/0	t0059	4697	1	0	1	0	0	0	copy fasta	WNT5A	chr3	55460715	55492306
WNT5B_chr12_1624231_1652212	0/1	t0001	1159	266	39	52	137	7	30	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	1/0	t0002	1159	122	46	22	32	4	17	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0003	1159	43	3	5	31	3	1	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0004	1159	5	1	3	1	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0005	1159	4	4	0	0	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0006	1159	2	0	0	0	0	2	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0007	1159	1	0	0	1	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0008	1159	1	0	0	1	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0009	1159	1	1	0	0	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0010	1159	1	0	0	1	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0011	1159	1	1	0	0	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0012	1159	1	0	1	0	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0013	1159	1	1	0	0	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT5B_chr12_1624231_1652212	0/0	t0014	1159	1	0	1	0	0	0	copy fasta	WNT5B	chr12	1624231	1652212
WNT6_chr2_218854805_218879233	1/0	t0001	622	328	78	62	144	8	35	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0002	623	11	1	3	6	0	1	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0003	622	11	11	0	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0004	622	2	0	0	0	0	2	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/1	t0005	622	1	0	0	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0006	623	1	1	0	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0007	622	1	0	0	1	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0008	622	1	1	0	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0009	622	1	0	1	0	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT6_chr2_218854805_218879233	0/0	t0010	622	1	0	0	1	0	0	copy fasta	WNT6	chr2	218854805	218879233
WNT7A_chr3_13811258_13885071	0/0	t0001	2953	11	0	1	9	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0002	2936	8	0	7	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0003	2946	8	0	3	5	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0004	2936	4	0	2	1	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	1/0	t0005	2942	4	0	1	1	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0006	2935	4	4	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0007	2936	3	1	0	2	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0008	2936	3	0	0	3	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0009	2936	3	0	0	1	0	2	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0010	2933	3	0	0	3	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0011	2934	3	0	2	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0012	2946	3	0	3	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0013	2952	3	0	0	1	2	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0014	2949	3	0	0	3	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0015	2950	3	3	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071