JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
WNT7A_chr3_13811258_13885071	0/0	t0166	2950	1	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0167	2938	1	0	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0168	2948	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0169	2935	1	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0170	2947	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0171	2935	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0172	2947	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0173	2945	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0174	2946	1	0	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0175	2946	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0176	2948	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0177	2951	1	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0178	2947	1	0	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0179	2949	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0180	2953	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0181	2944	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0182	2944	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0183	2952	1	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0184	2952	1	0	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0185	2952	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0186	2952	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0187	2954	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0188	2956	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0189	2956	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0190	2948	1	0	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0191	2948	1	0	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0192	2948	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0193	2948	1	0	0	0	1	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0194	2950	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0195	2931	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0196	2945	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0197	2949	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0198	2949	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0199	2949	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0200	2951	1	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0201	2953	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0202	2953	1	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0203	2953	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0204	2953	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0205	2953	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0206	2953	1	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0207	2955	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0208	2955	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0209	2955	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0210	2955	1	0	0	1	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0211	2932	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0212	2932	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0213	2932	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0214	2932	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0215	2946	1	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071