JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C18orf32_chr18_49472243_49492234	0/0	t0056	5328	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0057	5322	1	0	0	0	0	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0058	5321	1	0	0	0	0	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0059	5322	1	0	1	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0060	5321	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0061	5331	1	0	0	1	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0062	5318	1	0	0	0	0	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0063	5320	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0064	5342	1	0	0	0	0	1	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0065	5322	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0066	5322	1	1	0	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf32_chr18_49472243_49492234	0/0	t0067	5321	1	0	1	0	0	0	copy fasta	C18orf32	chr18	49472243	49492234
C18orf54_chr18_54352906_54387034	0/0	t0001	4100	112	17	27	54	2	12	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/1	t0002	4102	72	1	15	47	3	5	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0003	4098	23	9	3	1	4	6	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0004	4101	22	22	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0005	4102	15	6	2	0	4	3	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0006	4100	14	4	2	4	2	2	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0007	4099	11	0	1	10	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0008	4100	10	7	2	0	0	1	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0009	4102	7	7	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0010	4100	6	0	6	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0011	4101	6	2	1	0	0	3	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0012	4103	4	0	1	1	0	2	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0013	4100	3	3	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0014	4101	3	3	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0015	4101	2	1	1	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0016	4103	2	1	1	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0017	4100	2	0	0	2	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0018	4100	2	0	0	2	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0019	4101	2	1	0	0	0	1	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0020	4102	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0021	4102	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0022	4102	1	0	0	0	0	1	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0023	4103	1	0	0	0	0	1	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	1/0	t0024	4102	1	0	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0025	4102	1	0	1	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0026	4099	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0027	4099	1	0	1	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0028	4102	1	0	0	0	1	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0029	4100	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0030	4100	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0031	4100	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0032	4100	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0033	4101	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0034	4101	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0035	4102	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0036	4100	1	0	0	0	0	1	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	t0037	4100	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf63_chr18_74310839_74364189	0/1	t0001	3055	105	16	24	47	6	11	copy fasta	C18orf63	chr18	74310839	74364189